UHGV-0031441

Genome information

vOTU vOTU-002077

Genome length 45,088 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031441
vOTU ID	vOTU-002077
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_5_2395__NODE_635_length_45165_cov_10.421664
BioSample	SAMEA4766272
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.1
Jumbo phage	No

Genome content
Genome length	45,088 bps
GC content	46.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.28%
Average CDS length	594.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031441_1	PHROG	phrog_18608	NA	unknown function
UHGV-0031441_1	eggNOG-mapper	1230342.CTM_14483	alcohol dehydrogenase	NA
UHGV-0031441_1	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-0031441_2	PHROG	phrog_1640	tail protein	tail
UHGV-0031441_2	eggNOG-mapper	2754.EH55_08460	NA	NA
UHGV-0031441_3	PHROG	phrog_9880	NA	unknown function
UHGV-0031441_3	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0031441_3	eggNOG-mapper	1200557.JHWV01000001_gene264	NA	NA
UHGV-0031441_4	PHROG	phrog_10475	endolysin	lysis
UHGV-0031441_4	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0031441_4	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0031441_4	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0031441_4	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0031441_5	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0031441_5	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0031441_5	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0031441_6	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0031441_6	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0031441_7	PHROG	phrog_376	tail protein	tail
UHGV-0031441_7	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0031441_7	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0031441_7	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0031441_7	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0031441_8	PHROG	phrog_394	tail protein	tail
UHGV-0031441_8	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0031441_8	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0031441_8	Structural annotation	PF17212	NA	NA
UHGV-0031441_10	PHROG	phrog_427	NA	unknown function
UHGV-0031441_10	Structural annotation	PF21190	NA	NA
UHGV-0031441_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0031441_11	UniRef90	UniRef90_A0A345BQX7	Major capsid protein	NA
UHGV-0031441_11	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0031441_11	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0031441_11	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0031441_12	PHROG	phrog_458	protease	other
UHGV-0031441_12	UniRef90	UniRef90_UPI0019E883D9	peptidase	NA
UHGV-0031441_12	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0031441_13	PHROG	phrog_528	NA	unknown function
UHGV-0031441_13	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0031441_14	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0031441_14	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0031441_14	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0031441_14	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0031441_14	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0031441_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0031441_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0031441_16	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0031441_16	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-0031441_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0031441_16	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0031441_16	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0031441_18	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0031441_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0031441_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0031441_27	UniRef90	UniRef90_A0A7W1JM63	Single-stranded DNA-binding protein	NA
UHGV-0031441_27	eggNOG-mapper	1545701.LACWKB10_1167	Single-strand binding protein family	NA
UHGV-0031441_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0031441_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0031441_27	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0031441_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0031441_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0031441_28	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0031441_28	eggNOG-mapper	146269.A8YQM5_9CAUD	magnesium ion binding	NA
UHGV-0031441_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0031441_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0031441_32	PHROG	phrog_7713	NA	unknown function
UHGV-0031441_32	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0031441_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0031441_34	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0031441_34	UniRef90	UniRef90_A0A0C1Q4Q4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0031441_34	eggNOG-mapper	1201292.DR75_1527	C-5 cytosine-specific DNA methylase	NA
UHGV-0031441_34	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0031441_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0031441_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0031441_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0031441_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0031441_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0031441_36	UniRef90	UniRef90_A7AY33	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0031441_36	eggNOG-mapper	411470.RUMGNA_00198	NA	NA
UHGV-0031441_36	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0031441_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0031441_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0031441_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0031441_36	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0031441_39	PHROG	phrog_11769	NA	unknown function
UHGV-0031441_39	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0031441_39	eggNOG-mapper	169963.lmo2317	Replication initiation and membrane attachment	NA
UHGV-0031441_39	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0031441_39	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0031441_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0031441_39	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0031441_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0031441_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0031441_40	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0031441_40	eggNOG-mapper	224308.BSU26280	RecT family	NA
UHGV-0031441_40	Pfam	PF03837	RecT family	RecT
UHGV-0031441_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0031441_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0031441_40	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0031441_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0031441_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0031441_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031441_42	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0031441_42	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0031441_42	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0031441_42	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0031441_42	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0031441_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0031441_44	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0031441_44	Pfam	PF01476	LysM domain	LysM
UHGV-0031441_44	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0031441_45	Structural annotation	NF041909	NA	NA
UHGV-0031441_46	PHROG	phrog_6058	NA	unknown function
UHGV-0031441_46	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0031441_46	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0031441_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0031441_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0031441_50	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0031441_50	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-0031441_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031441_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031441_53	KOfam	K14059	int; integrase	NA
UHGV-0031441_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0031441_53	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0031441_53	eggNOG-mapper	1123288.SOV_2c10320	Belongs to the 'phage' integrase family	NA
UHGV-0031441_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0031441_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0031441_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0031441_54	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0031441_54	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0031441_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0031441_62	PHROG	phrog_32732	NA	unknown function
UHGV-0031441_62	UniRef90	UniRef90_UPI0004B597F3	NA	NA
UHGV-0031441_62	eggNOG-mapper	1415774.U728_724	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0031441_62	dbAPIS	APIS070	NA	NA
UHGV-0031441_63	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0031441_63	Structural annotation	PF21277	NA	NA
UHGV-0031441_65	PHROG	phrog_4105	NA	unknown function
UHGV-0031441_65	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0031441_67	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0031441_67	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0031441_67	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0031441_67	Pfam	PF14301	NA	DUF4376
UHGV-0031441_67	Structural annotation	PF14301	NA	NA