UHGV-0031448

Genome information

Genome length 40,768 bps

CDS count 47

Completeness 96.98% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031448
vOTU ID	vOTU-012927
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_G_5_2395__NODE_751_length_40768_cov_10.531027
BioSample	SAMEA4766272
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.27
Jumbo phage	No

Genome content
Genome length	40,768 bps
GC content	46.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.98%
Average CDS length	835.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031448_2	PHROG	phrog_443	holin	lysis
UHGV-0031448_2	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0031448_2	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0031448_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0031448_2	Structural annotation	PF16945	NA	NA
UHGV-0031448_4	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0031448_4	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0031448_4	eggNOG-mapper	1449355.JQNR01000003_gene639	Protein tyrosine serine phosphatase	NA
UHGV-0031448_4	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0031448_4	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0031448_5	PHROG	phrog_16573	NA	unknown function
UHGV-0031448_5	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0031448_5	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0031448_6	PHROG	phrog_22978	NA	unknown function
UHGV-0031448_6	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-0031448_7	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0031448_8	PHROG	phrog_372	tail protein	tail
UHGV-0031448_8	UniRef90	UniRef90_UPI001EE154D9	NA	NA
UHGV-0031448_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0031448_9	Structural annotation	NF038340	NA	NA
UHGV-0031448_10	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0031448_10	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0031448_10	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0031448_11	PHROG	phrog_12105	NA	unknown function
UHGV-0031448_11	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0031448_12	PHROG	phrog_15239	NA	unknown function
UHGV-0031448_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0031448_13	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0031448_13	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0031448_13	Pfam	PF13252	NA	DUF4043
UHGV-0031448_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0031448_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0031448_14	PHROG	phrog_13908	NA	unknown function
UHGV-0031448_14	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0031448_15	KOfam	K07584	NA	NA
UHGV-0031448_15	PHROG	phrog_4478	peptidase	other
UHGV-0031448_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0031448_15	COG	COG2868	NA	NA
UHGV-0031448_15	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0031448_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0031448_16	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0031448_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0031448_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0031448_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0031448_17	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0031448_17	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0031448_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0031448_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0031448_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0031448_23	PHROG	phrog_10714	NA	unknown function
UHGV-0031448_23	UniRef90	UniRef90_R6PMU2	DNA polymerase II large subunit	NA
UHGV-0031448_23	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0031448_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0031448_27	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0031448_27	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0031448_27	Pfam	PF14359	NA	DUF4406
UHGV-0031448_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0031448_28	PHROG	phrog_3136	NA	unknown function
UHGV-0031448_28	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0031448_28	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0031448_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0031448_28	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0031448_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0031448_30	UniRef90	UniRef90_A0A4P8JTL4	NA	NA
UHGV-0031448_30	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0031448_30	Pfam	PF06356	NA	DUF1064
UHGV-0031448_30	Structural annotation	PF06356	NA	NA
UHGV-0031448_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0031448_31	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0031448_31	UniRef90	UniRef90_A0A3R6NS16	Phage_rep_org_N domain-containing protein	NA
UHGV-0031448_31	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0031448_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0031448_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0031448_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0031448_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0031448_32	UniRef90	UniRef90_A0A373B679	Single-stranded DNA-binding protein	NA
UHGV-0031448_32	eggNOG-mapper	1391647.AVSV01000039_gene1087	Single-stranded DNA-binding protein	NA
UHGV-0031448_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0031448_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0031448_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0031448_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0031448_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0031448_33	PHROG	phrog_4973	NA	unknown function
UHGV-0031448_33	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0031448_33	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0031448_33	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0031448_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0031448_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0031448_34	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0031448_34	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0031448_34	Pfam	PF03837	RecT family	RecT
UHGV-0031448_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0031448_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0031448_34	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0031448_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031448_35	UniRef90	UniRef90_A0A1Y3S9B9	YqaJ domain-containing protein	NA
UHGV-0031448_35	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0031448_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0031448_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0031448_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0031448_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0031448_37	PHROG	phrog_3777	NA	unknown function
UHGV-0031448_37	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-0031448_37	eggNOG-mapper	608534.GCWU000341_02941	DpnD/PcfM-like protein	NA
UHGV-0031448_37	Pfam	PF12957	NA	DUF3846
UHGV-0031448_37	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0031448_37	Structural annotation	PF12957	NA	NA
UHGV-0031448_38	PHROG	phrog_5070	NA	unknown function
UHGV-0031448_38	UniRef90	UniRef90_A0A373IMM1	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0031448_38	eggNOG-mapper	1205681.CALW02000089_gene1441	lipid A biosynthetic process	NA
UHGV-0031448_38	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0031448_38	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0031448_39	PHROG	phrog_5781	NA	unknown function
UHGV-0031448_39	UniRef90	UniRef90_A0A2N2CA89	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0031448_39	eggNOG-mapper	255431.Q6UAS4_9CAUD	NA	NA
UHGV-0031448_39	Pfam	PF14359	NA	DUF4406
UHGV-0031448_39	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0031448_40	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0031448_40	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0031448_40	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0031448_40	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0031448_40	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0031448_40	Pfam	PF05063	MT-A70	MT-A70
UHGV-0031448_40	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0031448_40	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0031448_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0031448_43	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0031448_43	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0031448_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0031448_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031448_47	KOfam	K14059	int; integrase	NA
UHGV-0031448_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0031448_47	UniRef90	UniRef90_A0A373XZZ8	Site-specific integrase	NA
UHGV-0031448_47	eggNOG-mapper	272563.CD630_20660	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0031448_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0031448_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0031448_47	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA