UHGV-0031500

Genome information

vOTU vOTU-002079

Genome length 38,626 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031500
vOTU ID	vOTU-002079
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_1_2479__NODE_1498_length_38703_cov_8.463160
BioSample	SAMEA4766290
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.51
Jumbo phage	No

Genome content
Genome length	38,626 bps
GC content	60.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.64%
Average CDS length	494.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031500_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0031500_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0031500_1	UniRef90	UniRef90_A0A843IPK3	Site-specific integrase	NA
UHGV-0031500_1	eggNOG-mapper	1054217.TALC_00879	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules	NA
UHGV-0031500_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0031500_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0031500_2	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0031500_2	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0031500_7	eggNOG-mapper	693746.OBV_p-00390	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0031500_7	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0031500_7	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0031500_7	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0031500_10	PHROG	phrog_16490	NA	unknown function
UHGV-0031500_10	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0031500_12	PHROG	phrog_38418	NA	unknown function
UHGV-0031500_12	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0031500_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0031500_13	PHROG	phrog_15594	NA	unknown function
UHGV-0031500_14	UniRef90	UniRef90_A0A0W7TI75	DZANK-type domain-containing protein	NA
UHGV-0031500_16	PHROG	phrog_13879	NA	unknown function
UHGV-0031500_16	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0031500_17	PHROG	phrog_1194	NA	unknown function
UHGV-0031500_17	eggNOG-mapper	1122919.KB905559_gene1345	NA	NA
UHGV-0031500_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0031500_18	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0031500_18	COG	COG1511	NA	NA
UHGV-0031500_20	COG	COG1934	Lipopolysaccharide export system protein LptA	NA
UHGV-0031500_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0031500_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0031500_23	UniRef90	UniRef90_UPI00096A4208	HK97 gp10 family phage protein	NA
UHGV-0031500_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0031500_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0031500_25	Structural annotation	TIGR01560	NA	NA
UHGV-0031500_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-0031500_26	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0031500_26	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0031500_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0031500_27	UniRef90	UniRef90_A0A843IDC0	NA	NA
UHGV-0031500_27	Pfam	PF14265	NA	DUF4355
UHGV-0031500_27	Structural annotation	PF14265	NA	NA
UHGV-0031500_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0031500_28	UniRef90	UniRef90_A0A843IPG1	Minor capsid protein	NA
UHGV-0031500_28	eggNOG-mapper	572546.Arcpr_1507	Phage Mu protein F like protein	NA
UHGV-0031500_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0031500_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0031500_28	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0031500_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0031500_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0031500_29	UniRef90	UniRef90_A0A843IEY6	Phage portal protein	NA
UHGV-0031500_29	eggNOG-mapper	1121947.AUHK01000002_gene930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0031500_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0031500_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0031500_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0031500_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0031500_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0031500_30	UniRef90	UniRef90_A0A843IGX0	Terminase family protein	NA
UHGV-0031500_30	eggNOG-mapper	1415774.U728_837	phage terminase, large subunit, PBSX family	NA
UHGV-0031500_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0031500_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0031500_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0031500_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0031500_33	PHROG	phrog_21498	NA	unknown function
UHGV-0031500_33	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0031500_33	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0031500_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0031500_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0031500_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0031500_33	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG5119	NA	NA
UHGV-0031500_54	Pfam	PF01022	Bacterial regulatory protein, arsR family	HTH_5
UHGV-0031500_54	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0031500_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0031500_55	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0031500_55	UniRef90	UniRef90_A0A851I433	Cytosine-specific methyltransferase	NA
UHGV-0031500_55	eggNOG-mapper	526218.Sterm_2854	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0031500_55	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0031500_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0031500_55	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0031500_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0031500_55	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0031500_62	Structural annotation	PF01978, MF_01909, TIGR02719, COG3355	NA	NA
UHGV-0031500_63	Structural annotation	PF01978, MF_01909, TIGR02719, COG3355	NA	NA
UHGV-0031500_71	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0031500_71	Pfam	PF04404	ERF superfamily	ERF