UHGV-0031854

Genome information

Genome length 34,411 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031854
vOTU ID	vOTU-011739
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_6_1188__NODE_3194_length_34411_cov_7.867304
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.63
Jumbo phage	No

Genome content
Genome length	34,411 bps
GC content	38.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	95.71%
Average CDS length	495.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031854_2	Structural annotation	PF20536	NA	NA
UHGV-0031854_3	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0031854_4	PHROG	phrog_267	major head protein	head and packaging
UHGV-0031854_4	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0031854_4	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0031854_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0031854_5	Structural annotation	PF06810	NA	NA
UHGV-0031854_6	Structural annotation	PF11344	NA	NA
UHGV-0031854_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0031854_7	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-0031854_7	eggNOG-mapper	875454.BAEW01000002_gene479	Phage Mu protein F like protein	NA
UHGV-0031854_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0031854_7	COG	COG2369	NA	NA
UHGV-0031854_7	Structural annotation	PF06152	NA	NA
UHGV-0031854_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0031854_8	UniRef90	UniRef90_A0A3Q9SCD3	Helix-turn-helix domain-containing protein	NA
UHGV-0031854_8	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0031854_10	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0031854_11	PHROG	phrog_8684	NA	unknown function
UHGV-0031854_11	UniRef90	UniRef90_A0A3D4KYC5	YopX domain-containing protein	NA
UHGV-0031854_11	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0031854_11	Pfam	PF09643	YopX protein	YopX
UHGV-0031854_11	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0031854_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0031854_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0031854_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0031854_19	UniRef90	UniRef90_A0A218KBZ6	GIY-YIG domain-containing protein	NA
UHGV-0031854_19	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0031854_19	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0031854_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0031854_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0031854_20	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0031854_20	eggNOG-mapper	1007096.BAGW01000022_gene2657	Terminase-like family	NA
UHGV-0031854_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0031854_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0031854_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0031854_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0031854_23	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0031854_23	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0031854_23	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0031854_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0031854_25	Structural annotation	PF08207	NA	NA
UHGV-0031854_26	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0031854_26	UniRef90	UniRef90_A0A315ZXT4	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0031854_26	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0031854_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0031854_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0031854_26	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0031854_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0031854_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0031854_27	UniRef90	UniRef90_A0A843GZQ5	Single-stranded DNA-binding protein	NA
UHGV-0031854_27	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0031854_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0031854_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0031854_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0031854_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0031854_27	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0031854_30	PHROG	phrog_4973	NA	unknown function
UHGV-0031854_30	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0031854_30	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0031854_30	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0031854_30	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0031854_31	PHROG	phrog_7566	NA	unknown function
UHGV-0031854_31	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0031854_32	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031854_32	UniRef90	UniRef90_A0A317GG64	Endonuclease	NA
UHGV-0031854_32	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0031854_32	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0031854_32	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0031854_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0031854_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0031854_33	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0031854_33	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0031854_33	Pfam	PF05772	NinB protein	NinB
UHGV-0031854_33	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0031854_34	PHROG	phrog_14970	NA	unknown function
UHGV-0031854_34	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0031854_34	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0031854_34	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0031854_34	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0031854_34	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0031854_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0031854_35	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-0031854_35	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0031854_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0031854_35	Structural annotation	PF05565	NA	NA
UHGV-0031854_43	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0031854_44	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0031854_45	PHROG	phrog_16490	NA	unknown function
UHGV-0031854_45	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0031854_49	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0031854_49	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0031854_49	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0031854_50	AcrCatalog	cluster_17974	NA	NA
UHGV-0031854_52	PHROG	phrog_443	holin	lysis
UHGV-0031854_52	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0031854_52	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0031854_52	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0031854_52	Structural annotation	PF16945	NA	NA
UHGV-0031854_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0031854_53	PHROG	phrog_435	endolysin	lysis
UHGV-0031854_53	UniRef90	UniRef90_UPI0018992E37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031854_53	eggNOG-mapper	1203606.HMPREF1526_00346	Ami_3	NA
UHGV-0031854_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0031854_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031854_53	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0031854_57	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0031854_58	PHROG	phrog_1194	NA	unknown function
UHGV-0031854_58	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0031854_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0031854_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0031854_59	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0031854_59	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0031854_59	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0031854_59	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0031854_60	PHROG	phrog_706	NA	unknown function
UHGV-0031854_60	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0031854_60	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0031854_60	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0031854_60	Structural annotation	PF06854	NA	NA
UHGV-0031854_61	PHROG	phrog_11299	NA	unknown function
UHGV-0031854_61	Structural annotation	PF10666	NA	NA
UHGV-0031854_62	PHROG	phrog_3099	NA	unknown function
UHGV-0031854_62	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0031854_63	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0031854_63	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0031854_63	Structural annotation	PF11114	NA	NA
UHGV-0031854_64	Structural annotation	PF16724	NA	NA
UHGV-0031854_65	Structural annotation	PF20536	NA	NA
UHGV-0031854_67	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA