UHGV-0031956

Genome information

Genome length 28,611 bps

CDS count 41

Completeness 81.62% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0031956
vOTU ID	vOTU-034746
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_5_2654__NODE_1757_length_28611_cov_3.661772
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.29
Jumbo phage	No

Genome content
Genome length	28,611 bps
GC content	32.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.89%
Average CDS length	651.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031956_1	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0031956_1	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0031956_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0031956_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0031956_2	UniRef90	UniRef90_UPI0004B72672	terminase large subunit	NA
UHGV-0031956_2	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0031956_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0031956_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0031956_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0031956_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0031956_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0031956_3	UniRef90	UniRef90_UPI00164C7DD3	phage portal protein	NA
UHGV-0031956_3	eggNOG-mapper	1414720.CBYM010000002_gene574	Portal protein	NA
UHGV-0031956_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0031956_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0031956_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0031956_3	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0031956_4	KOfam	K06904	NA	NA
UHGV-0031956_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0031956_4	UniRef90	UniRef90_UPI00164AE523	HK97 family phage prohead protease	NA
UHGV-0031956_4	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0031956_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0031956_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0031956_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0031956_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0031956_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0031956_5	UniRef90	UniRef90_UPI00164A7C3B	phage major capsid protein	NA
UHGV-0031956_5	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0031956_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0031956_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0031956_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0031956_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0031956_6	PHROG	phrog_6865	NA	unknown function
UHGV-0031956_6	eggNOG-mapper	1399942.U3PBG9_9CAUD	NA	NA
UHGV-0031956_6	Structural annotation	PF01281	NA	NA
UHGV-0031956_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0031956_7	UniRef90	UniRef90_A0A168E1F6	Phage gp6-like head-tail connector protein	NA
UHGV-0031956_7	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0031956_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0031956_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0031956_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0031956_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0031956_8	UniRef90	UniRef90_UPI0004D41982	phage head closure protein	NA
UHGV-0031956_8	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0031956_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0031956_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0031956_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0031956_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0031956_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0031956_9	UniRef90	UniRef90_UPI0018984D6A	HK97 gp10 family phage protein	NA
UHGV-0031956_9	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0031956_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0031956_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0031956_9	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0031956_10	PHROG	phrog_78	tail terminator	connector
UHGV-0031956_10	eggNOG-mapper	748727.CLJU_c03630	NA	NA
UHGV-0031956_10	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0031956_11	PHROG	phrog_88	major tail protein	tail
UHGV-0031956_11	UniRef90	UniRef90_UPI001C0D753E	phage tail protein	NA
UHGV-0031956_11	eggNOG-mapper	1286171.EAL2_808p01800	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0031956_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0031956_11	COG	COG5492	NA	NA
UHGV-0031956_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0031956_12	PHROG	phrog_2115	tail protein	tail
UHGV-0031956_12	eggNOG-mapper	203119.Cthe_1710	NA	NA
UHGV-0031956_12	Structural annotation	PF11836	NA	NA
UHGV-0031956_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0031956_13	UniRef90	UniRef90_A0A8G1TGQ4	Phage tail tape measure protein	NA
UHGV-0031956_13	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0031956_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0031956_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0031956_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0031956_14	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0031956_14	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0031956_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0031956_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0031956_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0031956_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0031956_15	UniRef90	UniRef90_UPI0010553F39	phage tail protein	NA
UHGV-0031956_15	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0031956_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0031956_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0031956_15	COG	COG4926	Phage-related protein	NA
UHGV-0031956_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0031956_16	PHROG	phrog_24267	NA	unknown function
UHGV-0031956_16	UniRef90	UniRef90_UPI000C07ED94	NA	NA
UHGV-0031956_16	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0031956_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0031956_16	Structural annotation	PF10651, MF_04106, NF007636	NA	NA
UHGV-0031956_17	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0031956_17	PHROG	phrog_18023	tail fiber protein	tail
UHGV-0031956_17	UniRef90	UniRef90_A0A3D5FZ83	SGNH_hydro domain-containing protein	NA
UHGV-0031956_17	eggNOG-mapper	431943.CKL_0520	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0031956_17	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0031956_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0031956_18	PHROG	phrog_34399	NA	unknown function
UHGV-0031956_18	UniRef90	UniRef90_A0A3F2ZRI6	Putative membrane protein	NA
UHGV-0031956_18	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-0031956_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0031956_21	PHROG	phrog_1794	amidase	lysis
UHGV-0031956_21	UniRef90	UniRef90_A0A348Z2D2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031956_21	eggNOG-mapper	1443122.Z958_08055	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031956_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0031956_21	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0031956_21	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-0031956_23	PHROG	phrog_32996	NA	unknown function
UHGV-0031956_24	PHROG	phrog_2277	NA	unknown function
UHGV-0031956_24	eggNOG-mapper	999411.HMPREF1092_03191	NA	NA
UHGV-0031956_25	PHROG	phrog_10934	NA	unknown function
UHGV-0031956_25	eggNOG-mapper	632245.CLP_1672	NA	NA
UHGV-0031956_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0031956_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0031956_28	UniRef90	UniRef90_UPI001F21F2A4	recombinase family protein	NA
UHGV-0031956_28	eggNOG-mapper	1443122.Z958_07465	resolvase	NA
UHGV-0031956_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0031956_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0031956_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0031956_28	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0031956_29	KOfam	K20480	nprR, nprA; HTH-type transcriptional regulator, quorum sensing regulator NprR	NA
UHGV-0031956_29	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0031956_29	UniRef90	UniRef90_A0A6B4YR36	Helix-turn-helix transcriptional regulator	NA
UHGV-0031956_29	eggNOG-mapper	1121085.AUCI01000005_gene1017	Helix-turn-helix XRE-family like proteins	NA
UHGV-0031956_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0031956_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031956_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031956_34	PHROG	phrog_20007	NA	unknown function
UHGV-0031956_34	eggNOG-mapper	748727.CLJU_c36600	NA	NA
UHGV-0031956_38	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0031956_38	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031956_38	UniRef90	UniRef90_UPI000CDC8F55	NA	NA
UHGV-0031956_38	eggNOG-mapper	536232.CLM_2675	NA	NA
UHGV-0031956_38	Pfam	PF10926	NA	DUF2800
UHGV-0031956_38	COG	COG2887	RecB family exonuclease	NA
UHGV-0031956_38	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0031956_39	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0031956_39	UniRef90	UniRef90_UPI00192E2743	NA	NA
UHGV-0031956_39	eggNOG-mapper	536232.CLM_2674	NA	NA
UHGV-0031956_39	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0031956_39	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0031956_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0031956_40	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0031956_40	UniRef90	UniRef90_UPI0009DB9931	DNA cytosine methyltransferase	NA
UHGV-0031956_40	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0031956_40	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0031956_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0031956_40	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0031956_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0031956_40	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0031956_41	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0031956_41	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0031956_41	UniRef90	UniRef90_C8P6F6	DNA-dependent DNA polymerase, family A	NA
UHGV-0031956_41	eggNOG-mapper	1262449.CP6013_3181	DNA polymerase	NA
UHGV-0031956_41	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0031956_41	Structural annotation	PF01612, MF_00157, TIGR00573, COG0847	NA	NA