UHGV-0032070

Genome information

vOTU vOTU-019763

Genome length 41,960 bps

CDS count 52

Completeness 82.90% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032070
vOTU ID	vOTU-019763
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_6_1188__NODE_2368_length_41960_cov_5.189122
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.76
Jumbo phage	No

Genome content
Genome length	41,960 bps
GC content	48.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.65%
Average CDS length	757.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032070_1	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0032070_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0032070_3	Structural annotation	PF20942, NF033814, COG5456	NA	NA
UHGV-0032070_4	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0032070_4	PHROG	phrog_17422	NA	unknown function
UHGV-0032070_4	eggNOG-mapper	1122991.BAIZ01000025_gene1878	NA	NA
UHGV-0032070_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0032070_4	COG	COG4926	Phage-related protein	NA
UHGV-0032070_5	PHROG	phrog_6305	tail protein	tail
UHGV-0032070_5	eggNOG-mapper	411901.BACCAC_01133	NA	NA
UHGV-0032070_5	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0032070_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0032070_6	UniRef90	UniRef90_D1Q098	Tape measure domain protein	NA
UHGV-0032070_6	eggNOG-mapper	585502.HMPREF0645_2633	tape measure	NA
UHGV-0032070_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0032070_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0032070_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0032070_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0032070_7	PHROG	phrog_11996	NA	unknown function
UHGV-0032070_7	eggNOG-mapper	226186.BT_4435	NA	NA
UHGV-0032070_7	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0032070_8	PHROG	phrog_17745	NA	unknown function
UHGV-0032070_8	eggNOG-mapper	226186.BT_4434	NA	NA
UHGV-0032070_8	Structural annotation	PF06199, TIGR01603, COG5437	NA	NA
UHGV-0032070_9	PHROG	phrog_5597	NA	unknown function
UHGV-0032070_9	eggNOG-mapper	619693.HMPREF6745_2531	NA	NA
UHGV-0032070_9	Structural annotation	PF05657	NA	NA
UHGV-0032070_10	PHROG	phrog_5377	NA	unknown function
UHGV-0032070_10	UniRef90	UniRef90_UPI001897E37F	HK97 gp10 family phage protein	NA
UHGV-0032070_10	eggNOG-mapper	679189.HMPREF9019_0962	NA	NA
UHGV-0032070_11	PHROG	phrog_32776	NA	unknown function
UHGV-0032070_11	eggNOG-mapper	1122971.BAME01000006_gene899	NA	NA
UHGV-0032070_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-0032070_12	UniRef90	UniRef90_A0A6M3JUI2	Putative capsid protein	NA
UHGV-0032070_12	eggNOG-mapper	1122971.BAME01000006_gene900	Phage major capsid protein E	NA
UHGV-0032070_12	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0032070_12	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0032070_13	PHROG	phrog_20501	NA	unknown function
UHGV-0032070_13	Structural annotation	PF21430, MF_00014, NF009633	NA	NA
UHGV-0032070_14	PHROG	phrog_5824	NA	unknown function
UHGV-0032070_14	eggNOG-mapper	1211813.CAPH01000015_gene742	NA	NA
UHGV-0032070_15	PHROG	phrog_32997	NA	unknown function
UHGV-0032070_15	UniRef90	UniRef90_A0A374TG16	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-0032070_15	eggNOG-mapper	1122971.BAME01000006_gene903	NA	NA
UHGV-0032070_20	PHROG	phrog_35295	NA	unknown function
UHGV-0032070_20	UniRef90	UniRef90_A0A892FWV7	Gln_amidase domain-containing protein	NA
UHGV-0032070_20	eggNOG-mapper	886379.AEWI01000001_gene1744	NA	NA
UHGV-0032070_20	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0032070_20	Structural annotation	PF06152	NA	NA
UHGV-0032070_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0032070_21	UniRef90	UniRef90_A0A6I0KH07	Phage portal protein	NA
UHGV-0032070_21	eggNOG-mapper	1122971.BAME01000006_gene907	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0032070_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0032070_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0032070_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0032070_22	UniRef90	UniRef90_A0A5B3H654	Phage terminase large subunit	NA
UHGV-0032070_22	eggNOG-mapper	445970.ALIPUT_02660	domain protein	NA
UHGV-0032070_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0032070_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0032070_22	COG	COG5362	Phage terminase large subunit	NA
UHGV-0032070_22	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0032070_23	PHROG	phrog_645	Rnase E	DNA, RNA and nucleotide metabolism
UHGV-0032070_23	UniRef90	UniRef90_A0A6M3J0I5	Putative DNA binding, helix-turn-helix domain containing protein	NA
UHGV-0032070_23	eggNOG-mapper	1122971.BAME01000006_gene909	NA	NA
UHGV-0032070_24	PHROG	phrog_13321	NA	unknown function
UHGV-0032070_24	UniRef90	UniRef90_A0A0F9GX42	Elp3 domain-containing protein	NA
UHGV-0032070_24	eggNOG-mapper	1122971.BAME01000006_gene910	DNA photolyase activity	NA
UHGV-0032070_24	COG	COG1533	DNA repair photolyase	NA
UHGV-0032070_24	Structural annotation	PF20903, MF_01865, NF033668, COG2100	NA	NA
UHGV-0032070_25	KOfam	K03789	rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]	NA
UHGV-0032070_25	UniRef90	UniRef90_A0A843H3K1	GNAT family N-acetyltransferase	NA
UHGV-0032070_25	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0032070_25	COG	COG3153	Predicted N-acetyltransferase YhbS	NA
UHGV-0032070_25	Structural annotation	PF13673, MF_02210, NF000482, COG0456	NA	NA
UHGV-0032070_26	UniRef90	UniRef90_A0A843H065	AAA family ATPase	NA
UHGV-0032070_26	Structural annotation	PF18748, MF_00109, NF005257, COG0703	NA	NA
UHGV-0032070_27	UniRef90	UniRef90_A0A6I0JSP2	aGPT-Pplase2 domain-containing protein	NA
UHGV-0032070_27	Structural annotation	PF18746, NF009785	NA	NA
UHGV-0032070_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0032070_28	UniRef90	UniRef90_A0A3R6C0L8	ParB domain-containing protein	NA
UHGV-0032070_28	eggNOG-mapper	1122971.BAME01000006_gene912	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-0032070_28	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0032070_28	Structural annotation	PF02195, TIGR04285, COG1475	NA	NA
UHGV-0032070_29	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0032070_29	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0032070_29	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0032070_33	PHROG	phrog_874	NA	unknown function
UHGV-0032070_33	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0032070_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0032070_36	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0032070_36	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0032070_37	Pfam	PF04448	NA	DUF551
UHGV-0032070_40	PHROG	phrog_29547	NA	unknown function
UHGV-0032070_40	eggNOG-mapper	1122985.HMPREF1991_02244	NA	NA
UHGV-0032070_40	Pfam	PF20338	NA	DUF6633
UHGV-0032070_41	PHROG	phrog_16304	NA	unknown function
UHGV-0032070_41	eggNOG-mapper	1127692.HMPREF9075_00068	NA	NA
UHGV-0032070_41	Pfam	PF19808	NA	DUF6291
UHGV-0032070_41	Structural annotation	PF19808	NA	NA
UHGV-0032070_42	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0032070_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0032070_42	UniRef90	UniRef90_A0A6I0K2Y7	DEAD/DEAH box helicase	NA
UHGV-0032070_42	eggNOG-mapper	1122971.BAME01000058_gene4478	helicase superfamily c-terminal domain	NA
UHGV-0032070_42	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0032070_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0032070_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0032070_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0032070_42	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0032070_43	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0032070_43	UniRef90	UniRef90_UPI000D107D5B	NA	NA
UHGV-0032070_43	eggNOG-mapper	1287488.HMPREF0671_10860	NA	NA
UHGV-0032070_43	Pfam	PF11325	NA	DUF3127
UHGV-0032070_43	Structural annotation	PF11325, MF_00720, TIGR04418, COG2965	NA	NA
UHGV-0032070_44	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032070_44	UniRef90	UniRef90_A0A374TEN7	Endonuclease	NA
UHGV-0032070_44	eggNOG-mapper	470145.BACCOP_01177	YqaJ-like viral recombinase domain	NA
UHGV-0032070_44	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0032070_44	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0032070_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0032070_45	PHROG	phrog_3657	NA	unknown function
UHGV-0032070_45	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0032070_45	Structural annotation	PF04404	NA	NA
UHGV-0032070_46	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0032070_49	KOfam	K03555	mutS; DNA mismatch repair protein MutS	NA
UHGV-0032070_49	PHROG	phrog_8439	NA	unknown function
UHGV-0032070_49	eggNOG-mapper	1127696.HMPREF9134_00003	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	NA
UHGV-0032070_49	Pfam	PF01624	MutS domain I	MutS_I
UHGV-0032070_49	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0032070_50	Structural annotation	PF20293, MF_00732, NF041852, COG3432	NA	NA
UHGV-0032070_51	UniRef90	UniRef90_E6MLP3	HTH cro/C1-type domain-containing protein	NA
UHGV-0032070_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0032070_51	Structural annotation	PF01381, MF_00535, NF041575, COG1396	NA	NA
UHGV-0032070_52	UniRef90	UniRef90_A0A2V1J3M1	XRE family transcriptional regulator	NA
UHGV-0032070_52	eggNOG-mapper	1122971.BAME01000058_gene4484	NA	NA
UHGV-0032070_52	Structural annotation	PF13744, NF041951, COG1396	NA	NA