UHGV-0032138

Genome information

Genome length 40,620 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032138
vOTU ID	vOTU-044191
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_2892_length_40649_cov_7.535714
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	0.69
Jumbo phage	No

Genome content
Genome length	40,620 bps
GC content	52.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.17%
Average CDS length	568.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032138_2	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0032138_2	PHROG	phrog_30550	NA	unknown function
UHGV-0032138_2	UniRef90	UniRef90_A0A6N9PX25	Cell wall hydrolase	NA
UHGV-0032138_2	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0032138_2	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0032138_3	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0032138_3	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0032138_3	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0032138_7	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032138_7	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0032138_7	eggNOG-mapper	1283338.Q4Z920_BPTWO	hydrolase activity	NA
UHGV-0032138_9	PHROG	phrog_2164	NA	unknown function
UHGV-0032138_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0032138_12	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0032138_12	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0032138_12	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0032138_13	PHROG	phrog_23747	NA	unknown function
UHGV-0032138_13	Structural annotation	NF040944	NA	NA
UHGV-0032138_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0032138_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0032138_15	eggNOG-mapper	1121939.L861_09090	sequence-specific DNA binding	NA
UHGV-0032138_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032138_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0032138_16	Structural annotation	PF14634	NA	NA
UHGV-0032138_18	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032138_18	UniRef90	UniRef90_UPI001CB66B1B	PD-(D/E)XK nuclease family protein	NA
UHGV-0032138_18	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0032138_18	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0032138_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0032138_20	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0032138_20	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0032138_20	Pfam	PF03837	RecT family	RecT
UHGV-0032138_20	Structural annotation	NF007351	NA	NA
UHGV-0032138_22	PHROG	phrog_4973	NA	unknown function
UHGV-0032138_22	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0032138_22	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0032138_22	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0032138_23	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0032138_23	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-0032138_23	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0032138_23	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0032138_23	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0032138_24	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0032138_25	PHROG	phrog_25567	NA	unknown function
UHGV-0032138_25	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0032138_25	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0032138_25	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0032138_27	Structural annotation	PF17917	NA	NA
UHGV-0032138_28	PHROG	phrog_15863	NA	unknown function
UHGV-0032138_28	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0032138_28	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0032138_28	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0032138_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0032138_31	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0032138_31	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0032138_31	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0032138_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0032138_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0032138_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0032138_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0032138_33	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0032138_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0032138_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0032138_35	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0032138_35	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0032138_35	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0032138_35	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0032138_36	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0032138_36	Structural annotation	PF11650	NA	NA
UHGV-0032138_37	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0032138_37	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0032138_37	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0032138_38	PHROG	phrog_15594	NA	unknown function
UHGV-0032138_38	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0032138_38	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0032138_40	PHROG	phrog_13589	NA	unknown function
UHGV-0032138_40	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0032138_40	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0032138_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0032138_43	UniRef90	UniRef90_UPI001D08F33D	NA	NA
UHGV-0032138_43	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0032138_43	Pfam	PF14359	NA	DUF4406
UHGV-0032138_43	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0032138_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0032138_44	PHROG	phrog_7698	endolysin	lysis
UHGV-0032138_44	UniRef90	UniRef90_A0A843HNI7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032138_44	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032138_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0032138_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032138_44	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0032138_45	PHROG	phrog_1863	NA	unknown function
UHGV-0032138_45	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0032138_46	PHROG	phrog_13256	NA	unknown function
UHGV-0032138_46	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0032138_48	UniRef90	UniRef90_A0A212JSJ4	PBECR3 domain-containing protein	NA
UHGV-0032138_48	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0032138_48	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0032138_49	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0032138_52	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0032138_53	KOfam	K14059	int; integrase	NA
UHGV-0032138_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0032138_53	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-0032138_53	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0032138_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0032138_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0032138_53	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0032138_54	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0032138_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0032138_54	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0032138_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0032138_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0032138_56	UniRef90	UniRef90_A0A1C5PSE5	Predicted transcriptional regulator	NA
UHGV-0032138_56	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0032138_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032138_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0032138_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0032138_57	KOfam	K07485	K07485; transposase	NA
UHGV-0032138_57	PHROG	phrog_5749	transposase	integration and excision
UHGV-0032138_57	UniRef90	UniRef90_A0A845RIF1	ISL3 family transposase	NA
UHGV-0032138_57	eggNOG-mapper	1229783.C273_10552	zinc-finger of transposase IS204/IS1001/IS1096/IS1165	NA
UHGV-0032138_57	Pfam	PF14690	zinc-finger of transposase IS204/IS1001/IS1096/IS1165	zf-ISL3
UHGV-0032138_57	Pfam	PF01610	Transposase	DDE_Tnp_ISL3
UHGV-0032138_57	NCBIFam	NF033550.5	ISL3 family transposase	NA
UHGV-0032138_57	COG	COG3464	Transposase	NA
UHGV-0032138_57	Structural annotation	PF01610, PF20020, NF033550, COG3464	NA	NA
UHGV-0032138_58	PHROG	phrog_4738	transcriptional repressor	transcription regulation
UHGV-0032138_58	eggNOG-mapper	1105031.HMPREF1141_0887	NA	NA
UHGV-0032138_62	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0032138_63	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0032138_63	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0032138_63	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0032138_63	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0032138_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0032138_64	PHROG	phrog_14105	NA	unknown function
UHGV-0032138_64	eggNOG-mapper	526218.Sterm_0811	dextransucrase activity	NA
UHGV-0032138_64	COG	COG5263	Glucan-binding domain (YG repeat)	NA