UHGV-0032232

Genome information

vOTU vOTU-011949

Genome length 44,770 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032232
vOTU ID	vOTU-011949
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_18_2379__NODE_1183_length_44770_cov_4.771038
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.07
Jumbo phage	No

Genome content
Genome length	44,770 bps
GC content	59.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.99%
Average CDS length	821.54 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032232_1	KOfam	K14059	int; integrase	NA
UHGV-0032232_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0032232_1	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0032232_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0032232_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0032232_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0032232_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0032232_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0032232_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0032232_2	UniRef90	UniRef90_UPI0013565FBF	helix-turn-helix transcriptional regulator	NA
UHGV-0032232_2	eggNOG-mapper	411470.RUMGNA_01610	NA	NA
UHGV-0032232_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032232_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0032232_2	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0032232_4	PHROG	phrog_20886	NA	unknown function
UHGV-0032232_4	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0032232_4	eggNOG-mapper	1321782.HMPREF1986_02242	NA	NA
UHGV-0032232_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0032232_5	UniRef90	UniRef90_A0A1C6FNL9	HTH cro/C1-type domain-containing protein	NA
UHGV-0032232_5	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0032232_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0032232_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0032232_6	UniRef90	UniRef90_A0A1Y3RFS1	XRE family transcriptional regulator	NA
UHGV-0032232_6	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0032232_6	Structural annotation	TIGR03070	NA	NA
UHGV-0032232_8	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-0032232_10	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0032232_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0032232_14	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0032232_14	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0032232_15	PHROG	phrog_1029	NA	unknown function
UHGV-0032232_15	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0032232_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0032232_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0032232_16	PHROG	phrog_1499	NA	unknown function
UHGV-0032232_16	UniRef90	UniRef90_A0A1Q6JHZ0	AAA_23 domain-containing protein	NA
UHGV-0032232_16	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-0032232_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0032232_16	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0032232_16	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0032232_17	PHROG	phrog_21613	NA	unknown function
UHGV-0032232_17	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0032232_18	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032232_18	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0032232_18	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-0032232_18	Pfam	PF12684	NA	DUF3799
UHGV-0032232_18	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0032232_18	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0032232_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0032232_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0032232_19	UniRef90	UniRef90_A0A2U1BEJ1	Single-stranded DNA-binding protein	NA
UHGV-0032232_19	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0032232_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0032232_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0032232_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0032232_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0032232_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0032232_20	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0032232_20	PHROG	phrog_11992	NA	unknown function
UHGV-0032232_20	UniRef90	UniRef90_A0A1Q6JHS4	ZnF_CHCC domain-containing protein	NA
UHGV-0032232_20	eggNOG-mapper	1007096.BAGW01000023_gene150	CHC2 zinc finger	NA
UHGV-0032232_20	PADLOC	drt-cluster192	DRT	DRT
UHGV-0032232_20	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0032232_20	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0032232_20	Structural annotation	PF01807	NA	NA
UHGV-0032232_21	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0032232_21	UniRef90	UniRef90_UPI0002DD5FF2	NA	NA
UHGV-0032232_21	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0032232_21	Pfam	PF06048	NA	DUF927
UHGV-0032232_21	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0032232_21	COG	COG5519	NA	NA
UHGV-0032232_21	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0032232_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0032232_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0032232_22	UniRef90	UniRef90_A0A2U1BEG6	Superfamily II DNA or RNA helicase	NA
UHGV-0032232_22	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0032232_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0032232_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0032232_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0032232_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0032232_22	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0032232_23	PHROG	phrog_824	NA	unknown function
UHGV-0032232_23	UniRef90	UniRef90_A0A1Q6JHZ3	VRR-NUC domain-containing protein	NA
UHGV-0032232_23	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0032232_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0032232_23	Structural annotation	PF08774	NA	NA
UHGV-0032232_25	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0032232_25	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0032232_25	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0032232_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0032232_25	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0032232_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0032232_27	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0032232_27	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0032232_31	PHROG	phrog_2412	NA	unknown function
UHGV-0032232_31	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0032232_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0032232_32	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0032232_32	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0032232_32	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0032232_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0032232_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0032232_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0032232_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0032232_33	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0032232_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0032232_34	KOfam	K07584	NA	NA
UHGV-0032232_34	PHROG	phrog_4478	peptidase	other
UHGV-0032232_34	UniRef90	UniRef90_UPI00102FFAFD	ribosomal-processing cysteine protease Prp	NA
UHGV-0032232_34	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0032232_34	COG	COG2868	NA	NA
UHGV-0032232_34	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0032232_35	PHROG	phrog_13908	NA	unknown function
UHGV-0032232_35	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0032232_36	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0032232_36	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0032232_36	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0032232_36	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0032232_36	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0032232_38	PHROG	phrog_12105	NA	unknown function
UHGV-0032232_38	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0032232_39	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0032232_39	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0032232_39	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0032232_40	Structural annotation	NF038340	NA	NA
UHGV-0032232_41	PHROG	phrog_372	tail protein	tail
UHGV-0032232_41	UniRef90	UniRef90_UPI001D0897E0	NA	NA
UHGV-0032232_41	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0032232_41	Pfam	PF05895	NA	DUF859
UHGV-0032232_41	COG	COG4675	Phage tail collar domain	NA
UHGV-0032232_41	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0032232_42	PHROG	phrog_2649	endolysin	lysis
UHGV-0032232_42	UniRef90	UniRef90_A0A645A9U3	PG_binding_1 domain-containing protein	NA
UHGV-0032232_42	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0032232_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0032232_42	Structural annotation	PF01471, TIGR02869, COG3409	NA	NA
UHGV-0032232_43	PHROG	phrog_22978	NA	unknown function
UHGV-0032232_43	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0032232_43	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0032232_43	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0032232_44	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-0032232_45	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0032232_45	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0032232_45	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0032232_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0032232_45	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0032232_46	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0032232_46	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0032232_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0032232_46	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0032232_47	PHROG	phrog_2295	NA	unknown function
UHGV-0032232_47	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0032232_47	Structural annotation	PF21722	NA	NA
UHGV-0032232_48	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-0032232_49	PHROG	phrog_18593	NA	unknown function
UHGV-0032232_49	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0032232_49	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0032232_49	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0032232_49	Structural annotation	PF14600	NA	NA
UHGV-0032232_50	PHROG	phrog_1863	NA	unknown function
UHGV-0032232_50	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0032232_50	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0032232_51	PHROG	phrog_443	holin	lysis
UHGV-0032232_51	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0032232_51	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0032232_51	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0032232_51	Structural annotation	PF16945	NA	NA
UHGV-0032232_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0032232_52	PHROG	phrog_6745	endolysin	lysis
UHGV-0032232_52	UniRef90	UniRef90_A0A3R6JQ14	1,4-beta-N-acetylmuramidase	NA
UHGV-0032232_52	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0032232_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0032232_52	Pfam	PF05257	CHAP domain	CHAP
UHGV-0032232_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0032232_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0032232_52	Structural annotation	PF01183, PF01471, COG3757	NA	NA