UHGV-0032301

Genome information

Genome length 29,528 bps

CDS count 38

Completeness 72.20% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032301
vOTU ID	vOTU-024890
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_N_23_1309__NODE_1886_length_29528_cov_4.286951
BioSample	SAMEA4765760
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.27
Jumbo phage	No

Genome content
Genome length	29,528 bps
GC content	55.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.21%
Average CDS length	689.37 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032301_2	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0032301_3	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0032301_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032301_8	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0032301_8	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0032301_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0032301_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0032301_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0032301_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0032301_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0032301_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0032301_9	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0032301_9	eggNOG-mapper	40521.Q9T172_BPA18	DNA metabolic process	NA
UHGV-0032301_9	Pfam	PF03837	RecT family	RecT
UHGV-0032301_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0032301_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0032301_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0032301_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0032301_10	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0032301_10	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0032301_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0032301_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0032301_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0032301_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0032301_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0032301_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0032301_11	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0032301_11	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0032301_11	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0032301_11	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0032301_12	PHROG	phrog_4973	NA	unknown function
UHGV-0032301_12	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0032301_12	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0032301_12	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0032301_12	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0032301_13	PHROG	phrog_15768	NA	unknown function
UHGV-0032301_13	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-0032301_13	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0032301_13	AcrCatalog	cluster_38323	NA	NA
UHGV-0032301_13	Pfam	PF19808	NA	DUF6291
UHGV-0032301_13	Structural annotation	PF19808	NA	NA
UHGV-0032301_14	PHROG	phrog_9804	NA	unknown function
UHGV-0032301_14	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0032301_14	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0032301_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0032301_14	Structural annotation	PF11417	NA	NA
UHGV-0032301_16	PHROG	phrog_4433	NA	unknown function
UHGV-0032301_16	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0032301_16	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0032301_18	PHROG	phrog_21034	NA	unknown function
UHGV-0032301_18	eggNOG-mapper	1221522.B723_18435	NA	NA
UHGV-0032301_19	PHROG	phrog_3136	NA	unknown function
UHGV-0032301_19	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0032301_19	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0032301_22	PHROG	phrog_924	NA	unknown function
UHGV-0032301_22	UniRef90	UniRef90_R5EM45	NA	NA
UHGV-0032301_22	Pfam	PF04448	NA	DUF551
UHGV-0032301_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0032301_22	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0032301_24	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0032301_24	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-0032301_24	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0032301_24	eggNOG-mapper	1692.BMAGN_0788	Type II restriction enzyme, methylase subunits	NA
UHGV-0032301_24	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0032301_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0032301_26	UniRef90	UniRef90_A0A1I4EYA0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0032301_26	eggNOG-mapper	866895.HBHAL_4717	Helix-turn-helix XRE-family like proteins	NA
UHGV-0032301_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032301_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0032301_27	UniRef90	UniRef90_A0A1Y4UGY3	HTH cro/C1-type domain-containing protein	NA
UHGV-0032301_28	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0032301_28	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0032301_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0032301_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0032301_29	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0032301_29	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0032301_29	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0032301_30	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0032301_30	Structural annotation	PF11650	NA	NA
UHGV-0032301_32	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0032301_33	PHROG	phrog_15863	NA	unknown function
UHGV-0032301_33	UniRef90	UniRef90_UPI00068FC51E	J domain-containing protein	NA
UHGV-0032301_33	eggNOG-mapper	1519439.JPJG01000053_gene1369	DnaJ molecular chaperone homology domain	NA
UHGV-0032301_33	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0032301_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0032301_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0032301_35	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0032301_35	UniRef90	UniRef90_A0A6A8VHX7	Terminase_3 domain-containing protein	NA
UHGV-0032301_35	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0032301_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0032301_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0032301_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0032301_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0032301_37	UniRef90	UniRef90_A0A2V2DLC4	N4-gp56 family major capsid protein	NA
UHGV-0032301_37	eggNOG-mapper	315749.Bcer98_2943	NA	NA
UHGV-0032301_37	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0032301_37	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA