UHGV-0032547

Genome information

vOTU vOTU-019043

Genome length 35,137 bps

CDS count 63

Completeness 85.98% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032547
vOTU ID	vOTU-019043
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_N_17_1305__NODE_1735_length_35137_cov_10.587393
BioSample	SAMEA4765756
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.33
Jumbo phage	No

Genome content
Genome length	35,137 bps
GC content	50.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	94.04%
Average CDS length	527.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032547_1	PHROG	phrog_27197	NA	unknown function
UHGV-0032547_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0032547_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0032547_1	Structural annotation	NF007410	NA	NA
UHGV-0032547_4	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0032547_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0032547_5	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0032547_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0032547_5	Structural annotation	PF05772	NA	NA
UHGV-0032547_6	PHROG	phrog_7566	NA	unknown function
UHGV-0032547_6	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0032547_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0032547_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0032547_7	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-0032547_7	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0032547_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0032547_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0032547_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0032547_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0032547_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0032547_8	PHROG	phrog_4973	NA	unknown function
UHGV-0032547_8	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0032547_8	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0032547_8	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0032547_9	PHROG	phrog_15768	NA	unknown function
UHGV-0032547_9	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0032547_9	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0032547_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0032547_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0032547_10	UniRef90	UniRef90_A0A316NVS3	DNA helicase	NA
UHGV-0032547_10	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0032547_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0032547_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0032547_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0032547_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0032547_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0032547_13	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0032547_13	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0032547_13	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0032547_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0032547_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0032547_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0032547_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0032547_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0032547_14	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0032547_14	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0032547_14	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0032547_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0032547_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0032547_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0032547_14	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0032547_17	Structural annotation	TIGR03826	NA	NA
UHGV-0032547_21	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0032547_24	NCBIFam	TIGR01053.1	zinc finger domain, LSD1 subclass	NA
UHGV-0032547_27	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0032547_27	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0032547_27	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0032547_27	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0032547_27	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0032547_27	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0032547_27	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0032547_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0032547_28	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0032547_28	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0032547_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0032547_28	Structural annotation	PF16677	NA	NA
UHGV-0032547_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0032547_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0032547_29	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0032547_29	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0032547_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0032547_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0032547_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0032547_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0032547_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0032547_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0032547_30	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0032547_30	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0032547_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0032547_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0032547_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0032547_31	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0032547_31	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0032547_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0032547_31	COG	COG2369	NA	NA
UHGV-0032547_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0032547_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0032547_32	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0032547_32	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0032547_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0032547_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0032547_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0032547_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0032547_33	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0032547_33	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0032547_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0032547_34	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0032547_34	Structural annotation	PF06810	NA	NA
UHGV-0032547_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0032547_35	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0032547_35	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0032547_35	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0032547_35	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0032547_37	PHROG	phrog_17977	NA	unknown function
UHGV-0032547_37	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0032547_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0032547_38	PHROG	phrog_17405	head protein	head and packaging
UHGV-0032547_38	Structural annotation	PF11367	NA	NA
UHGV-0032547_39	PHROG	phrog_885	major tail protein	tail
UHGV-0032547_39	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0032547_39	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0032547_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0032547_40	PHROG	phrog_18646	NA	unknown function
UHGV-0032547_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0032547_42	UniRef90	UniRef90_A0A6N8JML2	Phage tail tape measure protein	NA
UHGV-0032547_42	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0032547_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0032547_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0032547_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0032547_42	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0032547_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0032547_43	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0032547_43	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0032547_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0032547_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0032547_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0032547_44	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0032547_44	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0032547_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0032547_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0032547_45	PHROG	phrog_9534	head protein	head and packaging
UHGV-0032547_45	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0032547_48	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0032547_48	Structural annotation	NF040910	NA	NA
UHGV-0032547_49	PHROG	phrog_19695	NA	unknown function
UHGV-0032547_49	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0032547_49	Structural annotation	PF19714	NA	NA
UHGV-0032547_50	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0032547_50	Structural annotation	PF10651, PF20328	NA	NA
UHGV-0032547_52	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0032547_52	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0032547_52	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0032547_52	eggNOG-mapper	264732.Moth_2422	G5 domain protein	NA
UHGV-0032547_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0032547_52	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0032547_52	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0032547_53	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0032547_54	PHROG	phrog_13256	NA	unknown function
UHGV-0032547_54	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0032547_55	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0032547_55	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0032547_55	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0032547_56	PHROG	phrog_3754	NA	unknown function
UHGV-0032547_56	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0032547_57	PHROG	phrog_21718	NA	unknown function
UHGV-0032547_57	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0032547_58	PHROG	phrog_22984	NA	unknown function
UHGV-0032547_59	PHROG	phrog_16490	NA	unknown function
UHGV-0032547_59	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0032547_60	PHROG	phrog_20016	NA	unknown function
UHGV-0032547_60	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0032547_60	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0032547_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0032547_61	Structural annotation	PF12510	NA	NA
UHGV-0032547_62	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA