UHGV-0032813

Genome information

Genome length 50,003 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032813
vOTU ID	vOTU-044231
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_H_9_1235__NODE_1236_length_50029_cov_13.554032
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.92
Jumbo phage	No

Genome content
Genome length	50,003 bps
GC content	30.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.91%
Average CDS length	911.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032813_2	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0032813_2	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0032813_2	eggNOG-mapper	1151292.QEW_0672	anaphase-promoting complex binding	NA
UHGV-0032813_2	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0032813_2	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0032813_3	PHROG	phrog_9648	tail protein	tail
UHGV-0032813_3	eggNOG-mapper	194699.FIBD_BPBPP	NA	NA
UHGV-0032813_3	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0032813_4	Structural annotation	PF06848, NF033679	NA	NA
UHGV-0032813_7	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0032813_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0032813_8	PHROG	phrog_435	endolysin	lysis
UHGV-0032813_8	UniRef90	UniRef90_A0A1I6LPA9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032813_8	eggNOG-mapper	1297617.JPJD01000049_gene1326	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032813_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0032813_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0032813_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0032813_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0032813_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0032813_9	UniRef90	UniRef90_F8UBB2	3''-phosphoadenosine 5''-phosphosulfate sulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0032813_9	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0032813_9	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0032813_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0032813_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0032813_9	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0032813_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0032813_11	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0032813_11	UniRef90	UniRef90_C9KJA0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0032813_11	eggNOG-mapper	401526.TcarDRAFT_1308	Endodeoxyribonuclease RusA	NA
UHGV-0032813_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0032813_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0032813_12	PHROG	phrog_774	NA	unknown function
UHGV-0032813_12	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0032813_13	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0032813_13	UniRef90	UniRef90_A0A846TX09	dUTPase	NA
UHGV-0032813_13	eggNOG-mapper	1427984.X271_00119	protein conserved in bacteria	NA
UHGV-0032813_13	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0032813_13	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0032813_13	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0032813_15	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0032813_15	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032813_15	UniRef90	UniRef90_UPI0010488E2D	PD-(D/E)XK nuclease family protein	NA
UHGV-0032813_15	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0032813_17	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0032813_17	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0032813_17	UniRef90	UniRef90_A0A2W4K2C4	DNA polymerase III subunit alpha	NA
UHGV-0032813_17	eggNOG-mapper	273068.TTE1818	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0032813_17	Pfam	PF02811	PHP domain	PHP
UHGV-0032813_17	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0032813_17	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0032813_17	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0032813_17	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0032813_17	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0032813_17	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0032813_19	PHROG	phrog_4897	kinase	other
UHGV-0032813_19	UniRef90	UniRef90_A0A418MBD6	NA	NA
UHGV-0032813_19	eggNOG-mapper	500635.MITSMUL_03175	NA	NA
UHGV-0032813_19	Pfam	PF11753	NA	DUF3310
UHGV-0032813_20	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0032813_20	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0032813_20	UniRef90	UniRef90_UPI0010539013	toprim domain-containing protein	NA
UHGV-0032813_20	eggNOG-mapper	403833.Pmob_0799	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0032813_20	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0032813_20	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0032813_20	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0032813_20	Structural annotation	PF01807, PF13155, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0032813_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0032813_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0032813_22	UniRef90	UniRef90_UPI000EBD570D	replicative DNA helicase	NA
UHGV-0032813_22	eggNOG-mapper	1273742.M1HNB2_9CAUD	DNA helicase activity	NA
UHGV-0032813_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0032813_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0032813_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0032813_25	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0032813_26	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0032813_26	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0032813_26	UniRef90	UniRef90_D7N742	Flavin-dependent thymidylate synthase	NA
UHGV-0032813_26	eggNOG-mapper	1354300.AUQY01000002_gene1193	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0032813_26	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0032813_26	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0032813_26	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0032813_26	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0032813_26	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0032813_29	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0032813_29	PHROG	phrog_15670	NA	unknown function
UHGV-0032813_29	UniRef90	UniRef90_UPI0010518C12	ThiF family adenylyltransferase	NA
UHGV-0032813_29	Pfam	PF00899	ThiF family	ThiF
UHGV-0032813_29	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0032813_29	Structural annotation	PF00899, MF_03049, NF004281, COG0476	NA	NA
UHGV-0032813_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0032813_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0032813_35	UniRef90	UniRef90_A0A6N3G1G0	Single-stranded DNA-binding protein	NA
UHGV-0032813_35	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0032813_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0032813_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0032813_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0032813_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0032813_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0032813_39	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0032813_39	UniRef90	UniRef90_UPI0010482774	helix-turn-helix domain-containing protein	NA
UHGV-0032813_39	eggNOG-mapper	279808.SH2359	NA	NA
UHGV-0032813_39	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0032813_40	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0032813_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0032813_40	UniRef90	UniRef90_UPI000E6C46F7	DNA packaging protein	NA
UHGV-0032813_40	eggNOG-mapper	935837.JAEK01000054_gene1465	Mu-like prophage FluMu protein gp28	NA
UHGV-0032813_40	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0032813_40	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0032813_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-0032813_41	UniRef90	UniRef90_A0A6M3K0N4	Putative head tail connector protein	NA
UHGV-0032813_41	eggNOG-mapper	1283071.R9R4C3_9CAUD	host cell wall	NA
UHGV-0032813_41	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0032813_43	PHROG	phrog_371	major head protein	head and packaging
UHGV-0032813_43	UniRef90	UniRef90_UPI000E6BE03E	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0032813_43	eggNOG-mapper	665950.HMPREF1025_01576	COGs COG4397 Mu-like prophage major head subunit gpT	NA
UHGV-0032813_43	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0032813_43	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-0032813_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0032813_46	eggNOG-mapper	935837.JAEK01000054_gene1472	NA	NA
UHGV-0032813_46	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0032813_49	PHROG	phrog_19111	NA	unknown function