UHGV-0032932

Genome information

Genome length 35,465 bps

CDS count 56

Completeness 98.28% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0032932
vOTU ID	vOTU-060277
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_20_1653__NODE_2719_length_35465_cov_7.457302
BioSample	SAMEA4765934
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.79
Jumbo phage	No

Genome content
Genome length	35,465 bps
GC content	62.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.36%
Average CDS length	575.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0032932_2	UniRef90	UniRef90_A0A658JVX5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0032932_2	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0032932_2	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0032932_3	PHROG	phrog_21357	endolysin	lysis
UHGV-0032932_3	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0032932_3	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0032932_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-0032932_3	COG	COG1388	LysM repeat	NA
UHGV-0032932_3	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0032932_4	PHROG	phrog_13256	NA	unknown function
UHGV-0032932_4	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0032932_5	UniRef90	UniRef90_A0A437S4D3	NAGPA domain-containing protein	NA
UHGV-0032932_5	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0032932_6	PHROG	phrog_4105	NA	unknown function
UHGV-0032932_8	PHROG	phrog_134	NA	unknown function
UHGV-0032932_8	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0032932_8	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0032932_8	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0032932_8	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0032932_9	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0032932_10	PHROG	phrog_37900	NA	unknown function
UHGV-0032932_10	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0032932_10	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0032932_10	Pfam	PF19789	NA	DUF6273
UHGV-0032932_10	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0032932_10	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-0032932_11	PHROG	phrog_18725	NA	unknown function
UHGV-0032932_11	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0032932_11	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0032932_12	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0032932_12	PHROG	phrog_11157	NA	unknown function
UHGV-0032932_12	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0032932_12	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0032932_12	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0032932_12	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0032932_12	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0032932_12	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0032932_14	PHROG	phrog_13879	NA	unknown function
UHGV-0032932_14	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0032932_14	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0032932_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0032932_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0032932_16	PHROG	phrog_23464	NA	unknown function
UHGV-0032932_16	UniRef90	UniRef90_A0A1V5IWJ7	Chromosome partition protein Smc	NA
UHGV-0032932_16	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0032932_16	COG	COG5412	Phage-related protein	NA
UHGV-0032932_16	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0032932_17	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0032932_18	PHROG	phrog_88	major tail protein	tail
UHGV-0032932_18	COG	COG5492	NA	NA
UHGV-0032932_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0032932_19	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0032932_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0032932_19	Structural annotation	TIGR01725	NA	NA
UHGV-0032932_20	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0032932_20	Structural annotation	PF05657	NA	NA
UHGV-0032932_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0032932_21	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0032932_21	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0032932_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0032932_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0032932_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0032932_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0032932_22	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0032932_22	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0032932_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0032932_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0032932_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0032932_23	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0032932_23	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0032932_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0032932_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0032932_23	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0032932_24	PHROG	phrog_16951	NA	unknown function
UHGV-0032932_24	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0032932_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0032932_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0032932_25	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0032932_25	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0032932_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0032932_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0032932_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0032932_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0032932_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0032932_27	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0032932_27	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0032932_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0032932_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0032932_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0032932_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0032932_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0032932_28	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0032932_28	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0032932_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0032932_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0032932_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0032932_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0032932_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0032932_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0032932_29	UniRef90	UniRef90_A0A7C6WAH1	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-0032932_29	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0032932_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0032932_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0032932_29	COG	COG0863	DNA modification methylase	NA
UHGV-0032932_29	Structural annotation	PF12847, TIGR02469	NA	NA
UHGV-0032932_30	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0032932_30	UniRef90	UniRef90_UPI0018AB4F00	site-specific DNA-methyltransferase	NA
UHGV-0032932_30	eggNOG-mapper	641112.ACOK01000108_gene1785	NA	NA
UHGV-0032932_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0032932_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0032932_30	COG	COG0863	DNA modification methylase	NA
UHGV-0032932_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0032932_31	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0032932_31	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0032932_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0032932_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0032932_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0032932_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0032932_32	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0032932_32	Structural annotation	PF21578	NA	NA
UHGV-0032932_37	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0032932_37	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0032932_37	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0032932_37	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0032932_38	Pfam	PF04448	NA	DUF551
UHGV-0032932_38	Structural annotation	NF041588	NA	NA
UHGV-0032932_40	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0032932_40	PHROG	phrog_27290	NA	unknown function
UHGV-0032932_40	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0032932_40	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0032932_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0032932_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0032932_40	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0032932_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0032932_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0032932_41	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0032932_41	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0032932_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0032932_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0032932_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0032932_42	PHROG	phrog_27610	NA	unknown function
UHGV-0032932_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0032932_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0032932_43	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0032932_43	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0032932_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0032932_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0032932_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0032932_43	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0032932_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0032932_44	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0032932_44	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0032932_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0032932_44	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0032932_46	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0032932_46	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0032932_46	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0032932_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0032932_46	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0032932_46	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0032932_47	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0032932_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0032932_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0032932_48	UniRef90	UniRef90_A0A1Y3SLP5	HTH cro/C1-type domain-containing protein	NA
UHGV-0032932_48	eggNOG-mapper	1410650.JHWL01000004_gene1768	Helix-turn-helix XRE-family like proteins	NA
UHGV-0032932_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032932_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0032932_49	Structural annotation	PF09202, MF_01819, NF002926, COG3432	NA	NA
UHGV-0032932_50	UniRef90	UniRef90_A0A7X3ASF1	XRE family transcriptional regulator	NA
UHGV-0032932_50	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0032932_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0032932_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0032932_50	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0032932_51	PHROG	phrog_17982	NA	unknown function
UHGV-0032932_51	eggNOG-mapper	881621.LIV_0584	NA	NA
UHGV-0032932_51	Pfam	PF14020	NA	DUF4236
UHGV-0032932_52	KOfam	K14059	int; integrase	NA
UHGV-0032932_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0032932_52	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0032932_52	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0032932_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0032932_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0032932_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0032932_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0032932_53	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0032932_53	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0032932_55	Structural annotation	PF18573, NF033147	NA	NA