UHGV-0033043

Genome information

vOTU vOTU-020476

Genome length 34,140 bps

CDS count 61

Completeness 89.57% (medium-quality)

geNomad score 0.9686

Prediction confidence Confident

Genome information
Genome ID	UHGV-0033043
vOTU ID	vOTU-020476
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_1_2651__NODE_1457_length_34140_cov_16.696181
BioSample	SAMEA4766391
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9686
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.58
Jumbo phage	No

Genome content
Genome length	34,140 bps
GC content	27.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.58%
Average CDS length	526.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0033043_1	KOfam	K02358	tuf, TUFM; elongation factor Tu	NA
UHGV-0033043_1	UniRef90	UniRef90_A0A3D1DD63	Elongation factor Tu (Fragment)	NA
UHGV-0033043_1	eggNOG-mapper	592031.GCWU000322_00469	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	NA
UHGV-0033043_1	Pfam	PF03143	Elongation factor Tu C-terminal domain	GTP_EFTU_D3
UHGV-0033043_1	COG	COG0050	Translation elongation factor EF-Tu, a GTPase	NA
UHGV-0033043_2	KOfam	K14059	int; integrase	NA
UHGV-0033043_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0033043_2	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0033043_2	eggNOG-mapper	1121342.AUCO01000012_gene1740	Belongs to the 'phage' integrase family	NA
UHGV-0033043_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0033043_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0033043_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0033043_2	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0033043_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0033043_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0033043_3	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0033043_3	eggNOG-mapper	536233.CLO_0501	Peptidase S24-like	NA
UHGV-0033043_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0033043_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0033043_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0033043_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0033043_4	UniRef90	UniRef90_R5ZN14	HTH_8 domain-containing protein	NA
UHGV-0033043_4	eggNOG-mapper	1294142.CINTURNW_1656	NA	NA
UHGV-0033043_4	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0033043_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0033043_11	UniRef90	UniRef90_UPI000983E304	AAA family ATPase	NA
UHGV-0033043_11	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0033043_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0033043_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0033043_12	PHROG	phrog_18107	NA	unknown function
UHGV-0033043_12	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0033043_12	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0033043_12	Pfam	PF05037	NA	DUF669
UHGV-0033043_12	Structural annotation	PF05037	NA	NA
UHGV-0033043_13	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0033043_13	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0033043_13	UniRef90	UniRef90_A0A1C6GV86	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-0033043_13	eggNOG-mapper	445335.CBN_1368	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0033043_13	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0033043_13	Pfam	PF19263	NA	DUF5906
UHGV-0033043_13	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0033043_13	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0033043_13	Structural annotation	PF19263, PF08706, PF02257, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0033043_16	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0033043_16	UniRef90	UniRef90_UPI000931E6D4	Holliday junction resolvase RecU	NA
UHGV-0033043_16	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0033043_16	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0033043_16	Structural annotation	PF03838, MF_01490, NF040854, COG1591	NA	NA
UHGV-0033043_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0033043_17	UniRef90	UniRef90_A0A249XVQ5	NUMOD4 motif protein	NA
UHGV-0033043_17	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0033043_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0033043_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0033043_19	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0033043_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0033043_20	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0033043_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0033043_20	UniRef90	UniRef90_A0A7G5MY70	DEAD/DEAH box helicase	NA
UHGV-0033043_20	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0033043_20	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0033043_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0033043_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0033043_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0033043_20	Structural annotation	PF16203, PF04851, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0033043_25	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0033043_25	UniRef90	UniRef90_A0A1C0AG94	NAD(P)-dependent oxidoreductase	NA
UHGV-0033043_25	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0033043_25	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0033043_25	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-0033043_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0033043_29	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0033043_29	eggNOG-mapper	1235792.C808_03090	NA	NA
UHGV-0033043_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0033043_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0033043_33	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0033043_33	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0033043_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0033043_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0033043_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0033043_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0033043_34	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0033043_34	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-0033043_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0033043_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0033043_34	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0033043_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0033043_35	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-0033043_35	eggNOG-mapper	1232449.BAHV02000018_gene1530	NA	NA
UHGV-0033043_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0033043_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0033043_36	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0033043_36	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-0033043_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0033043_36	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0033043_38	PHROG	phrog_11491	NA	unknown function
UHGV-0033043_38	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-0033043_38	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-0033043_38	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0033043_39	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0033043_39	eggNOG-mapper	1105031.HMPREF1141_3283	NA	NA
UHGV-0033043_39	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0033043_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0033043_41	UniRef90	UniRef90_A0A1H9GNE0	Prophage antirepressor	NA
UHGV-0033043_41	eggNOG-mapper	1118054.CAGW01000094_gene4684	BRO family, N-terminal domain	NA
UHGV-0033043_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0033043_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0033043_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0033043_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-0033043_44	UniRef90	UniRef90_A0A1Q6LIQ2	Phage capsid protein	NA
UHGV-0033043_44	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0033043_44	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0033043_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0033043_46	eggNOG-mapper	1282664.H354_06671	NA	NA
UHGV-0033043_47	PHROG	phrog_8710	NA	unknown function
UHGV-0033043_47	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0033043_47	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0033043_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0033043_48	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0033043_48	Structural annotation	PF11114	NA	NA
UHGV-0033043_49	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0033043_49	UniRef90	UniRef90_UPI00193BFD11	minor capsid protein	NA
UHGV-0033043_49	eggNOG-mapper	1219626.HMPREF1639_07205	NA	NA
UHGV-0033043_49	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0033043_49	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0033043_50	PHROG	phrog_820	major tail protein	tail
UHGV-0033043_50	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0033043_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0033043_51	PHROG	phrog_8300	NA	unknown function
UHGV-0033043_51	Structural annotation	PF06896	NA	NA
UHGV-0033043_52	PHROG	phrog_8355	NA	unknown function
UHGV-0033043_52	UniRef90	UniRef90_A0A1M4ZC38	Bacteriophage Gp15 protein	NA
UHGV-0033043_52	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0033043_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0033043_52	Structural annotation	PF06854	NA	NA
UHGV-0033043_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0033043_53	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0033043_53	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0033043_53	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0033043_53	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0033043_54	PHROG	phrog_1194	NA	unknown function
UHGV-0033043_54	UniRef90	UniRef90_S9U814	Lj965 prophage protein	NA
UHGV-0033043_54	eggNOG-mapper	1122918.KB907248_gene4488	NA	NA
UHGV-0033043_54	Pfam	PF20458	NA	DUF6711
UHGV-0033043_54	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0033043_55	PHROG	phrog_6616	tail protein	tail
UHGV-0033043_55	UniRef90	UniRef90_R7F857	Phage minor structural protein	NA
UHGV-0033043_55	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0033043_55	COG	COG4926	Phage-related protein	NA
UHGV-0033043_56	UniRef90	UniRef90_R7F6Y9	Phage tail fiber repeat-containing protein	NA
UHGV-0033043_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0033043_60	PHROG	phrog_443	holin	lysis
UHGV-0033043_60	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0033043_60	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0033043_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0033043_60	Structural annotation	PF16945	NA	NA
UHGV-0033043_61	PHROG	phrog_872	NA	unknown function
UHGV-0033043_61	UniRef90	UniRef90_A0A350S1T8	NA	NA
UHGV-0033043_61	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-0033043_61	Pfam	PF11195	NA	DUF2829
UHGV-0033043_61	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA