UHGV-0033598

Genome information

vOTU vOTU-012058

Genome length 73,346 bps

CDS count 87

Completeness 99.58% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0033598
vOTU ID	vOTU-012058
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_6_2620__NODE_610_length_73346_cov_12.383218
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18
Jumbo phage	No

Genome content
Genome length	73,346 bps
GC content	43.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	89.23%
Average CDS length	753.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0033598_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0033598_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0033598_1	UniRef90	UniRef90_A0A3R6PLE7	Site-specific integrase	NA
UHGV-0033598_1	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0033598_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0033598_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0033598_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0033598_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0033598_1	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0033598_2	UniRef90	UniRef90_A0A646FWN7	Helix-turn-helix transcriptional regulator	NA
UHGV-0033598_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0033598_3	PHROG	phrog_16858	NA	unknown function
UHGV-0033598_5	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0033598_5	UniRef90	UniRef90_A0A415VFZ7	Recombinase	NA
UHGV-0033598_5	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-0033598_5	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0033598_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0033598_5	Structural annotation	PF05766	NA	NA
UHGV-0033598_6	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0033598_6	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0033598_6	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0033598_6	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0033598_6	PADLOC	AAA_15	NA	NA
UHGV-0033598_6	Pfam	PF13476	AAA domain	AAA_23
UHGV-0033598_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0033598_6	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0033598_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0033598_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0033598_7	UniRef90	UniRef90_A0A3R6PLT7	Recombinase	NA
UHGV-0033598_7	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0033598_7	Pfam	PF03837	RecT family	RecT
UHGV-0033598_7	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0033598_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0033598_7	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0033598_8	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0033598_8	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0033598_8	UniRef90	UniRef90_A0A646FRH1	Lactamase_B domain-containing protein	NA
UHGV-0033598_8	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-0033598_8	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0033598_8	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0033598_8	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0033598_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0033598_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0033598_10	eggNOG-mapper	1166018.FAES_3914	NA	NA
UHGV-0033598_11	Structural annotation	PF20338	NA	NA
UHGV-0033598_14	Structural annotation	PF18195, COG5475	NA	NA
UHGV-0033598_17	PHROG	phrog_17873	NA	unknown function
UHGV-0033598_18	PHROG	phrog_1365	NA	unknown function
UHGV-0033598_20	Structural annotation	PF17516, COG1862	NA	NA
UHGV-0033598_26	UniRef90	UniRef90_A0A374TCN1	Fructan hydrolase	NA
UHGV-0033598_26	eggNOG-mapper	483215.BACFIN_05621	NA	NA
UHGV-0033598_27	PHROG	phrog_8684	NA	unknown function
UHGV-0033598_27	UniRef90	UniRef90_A0A413BUU5	YopX domain-containing protein	NA
UHGV-0033598_27	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-0033598_27	Pfam	PF09643	YopX protein	YopX
UHGV-0033598_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0033598_31	UniRef90	UniRef90_UPI001C390AB8	NA	NA
UHGV-0033598_31	Structural annotation	PF11195	NA	NA
UHGV-0033598_32	PHROG	phrog_625	NA	unknown function
UHGV-0033598_32	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-0033598_32	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0033598_32	Structural annotation	PF12961	NA	NA
UHGV-0033598_35	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-0033598_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0033598_35	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0033598_36	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0033598_37	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0033598_37	PHROG	phrog_181	endolysin	lysis
UHGV-0033598_37	UniRef90	UniRef90_A0A353E7E4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0033598_37	eggNOG-mapper	160488.PP_3066	hmm pf00182	NA
UHGV-0033598_37	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0033598_37	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0033598_37	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0033598_38	PHROG	phrog_20732	NA	unknown function
UHGV-0033598_38	UniRef90	UniRef90_A0A6G7X1I7	Phage holin family protein	NA
UHGV-0033598_38	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0033598_38	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0033598_41	PHROG	phrog_27246	NA	unknown function
UHGV-0033598_42	PHROG	phrog_32516	NA	unknown function
UHGV-0033598_42	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0033598_42	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0033598_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0033598_43	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0033598_43	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0033598_43	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0033598_43	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0033598_46	Structural annotation	PF02368	NA	NA
UHGV-0033598_48	PHROG	phrog_156	portal protein	head and packaging
UHGV-0033598_48	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0033598_48	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0033598_49	PHROG	phrog_22323	NA	unknown function
UHGV-0033598_49	eggNOG-mapper	1121098.HMPREF1534_01121	NA	NA
UHGV-0033598_50	PHROG	phrog_26635	NA	unknown function
UHGV-0033598_50	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0033598_52	Structural annotation	PF17212	NA	NA
UHGV-0033598_53	PHROG	phrog_21412	tail fiber protein	tail
UHGV-0033598_54	Structural annotation	PF10794, PF13620, TIGR04134, NF038094, COG2512	NA	NA
UHGV-0033598_55	UniRef90	UniRef90_UPI001F36DCAA	NA	NA
UHGV-0033598_55	eggNOG-mapper	1122985.HMPREF1991_01560	NA	NA
UHGV-0033598_55	Pfam	PF14301	NA	DUF4376
UHGV-0033598_55	Structural annotation	PF14301	NA	NA
UHGV-0033598_56	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0033598_57	PHROG	phrog_38431	NA	unknown function
UHGV-0033598_57	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0033598_57	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0033598_59	PHROG	phrog_28898	NA	unknown function
UHGV-0033598_59	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0033598_59	Structural annotation	PF10781	NA	NA
UHGV-0033598_60	PHROG	phrog_31654	NA	unknown function
UHGV-0033598_60	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0033598_61	PHROG	phrog_16490	NA	unknown function
UHGV-0033598_61	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0033598_61	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0033598_63	PHROG	phrog_14770	NA	unknown function
UHGV-0033598_63	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-0033598_63	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0033598_63	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0033598_63	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0033598_63	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0033598_63	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0033598_63	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0033598_66	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-0033598_66	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-0033598_67	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0033598_68	UniRef90	UniRef90_A0A412HHM5	XRE family transcriptional regulator	NA
UHGV-0033598_68	eggNOG-mapper	1122991.BAIZ01000025_gene1903	NA	NA
UHGV-0033598_68	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0033598_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0033598_68	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0033598_80	PHROG	phrog_7445	NA	unknown function
UHGV-0033598_80	UniRef90	UniRef90_UPI00195E6A64	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0033598_80	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-0033598_80	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0033598_80	Structural annotation	PF14058	NA	NA
UHGV-0033598_81	PHROG	phrog_8470	NA	unknown function
UHGV-0033598_81	UniRef90	UniRef90_A0A2V1IJY8	PcfJ-like protein	NA
UHGV-0033598_81	eggNOG-mapper	626522.GCWU000325_02735	NA	NA
UHGV-0033598_81	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0033598_81	Structural annotation	PF14284	NA	NA
UHGV-0033598_83	Structural annotation	PF10623	NA	NA
UHGV-0033598_85	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0033598_85	PHROG	phrog_200	lipoprotein	other
UHGV-0033598_85	UniRef90	UniRef90_A0A3R6JWU3	PHB domain-containing protein	NA
UHGV-0033598_85	eggNOG-mapper	1122621.ATZA01000001_gene1899	stress-induced mitochondrial fusion	NA
UHGV-0033598_85	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0033598_85	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0033598_85	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0033598_87	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0033598_87	Structural annotation	PF04492, TIGR01714	NA	NA