UHGV-0033994

Genome information

Genome length 41,862 bps

CDS count 74

Completeness 99.90% (high-quality)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-0033994
vOTU ID	vOTU-013202
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_J_9_1249__NODE_1513_length_41862_cov_7.472777
BioSample	SAMEA4765703
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.24
Jumbo phage	No

Genome content
Genome length	41,862 bps
GC content	65.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	87.64%
Average CDS length	498.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0033994_1	UniRef90	UniRef90_UPI000C85B211	helix-turn-helix domain-containing protein	NA
UHGV-0033994_1	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0033994_12	Structural annotation	PF04545, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0033994_15	Structural annotation	PF17399	NA	NA
UHGV-0033994_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0033994_20	KOfam	K14059	int; integrase	NA
UHGV-0033994_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0033994_20	UniRef90	UniRef90_UPI000E3C8C88	site-specific integrase	NA
UHGV-0033994_20	eggNOG-mapper	565653.EGBG_01936	Belongs to the 'phage' integrase family	NA
UHGV-0033994_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0033994_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0033994_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0033994_26	KOfam	K06940	NA	NA
UHGV-0033994_26	PHROG	phrog_32498	NA	unknown function
UHGV-0033994_26	UniRef90	UniRef90_A0A7X9UBZ8	YkgJ family cysteine cluster protein	NA
UHGV-0033994_26	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0033994_26	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0033994_32	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0033994_32	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0033994_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0033994_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0033994_33	UniRef90	UniRef90_UPI000E3CCC4C	single-stranded DNA-binding protein	NA
UHGV-0033994_33	eggNOG-mapper	553184.ATORI0001_1274	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0033994_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0033994_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0033994_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0033994_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0033994_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0033994_36	UniRef90	UniRef90_A0A7X9UC10	Helix-turn-helix domain-containing protein	NA
UHGV-0033994_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0033994_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0033994_36	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0033994_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0033994_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0033994_38	UniRef90	UniRef90_A0A6A2RI40	Phage antirepressor Ant	NA
UHGV-0033994_38	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-0033994_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0033994_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0033994_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0033994_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0033994_39	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0033994_39	eggNOG-mapper	521003.COLINT_02305	NA	NA
UHGV-0033994_39	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0033994_39	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0033994_40	eggNOG-mapper	521003.COLINT_02304	IMG reference gene	NA
UHGV-0033994_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0033994_40	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0033994_42	KOfam	K14059	int; integrase	NA
UHGV-0033994_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0033994_42	UniRef90	UniRef90_UPI001106575D	tyrosine-type recombinase/integrase	NA
UHGV-0033994_42	eggNOG-mapper	1504822.CCNO01000015_gene585	Belongs to the 'phage' integrase family	NA
UHGV-0033994_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0033994_42	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0033994_43	PHROG	phrog_6160	NA	unknown function
UHGV-0033994_43	eggNOG-mapper	2754.EH55_02950	NA	NA
UHGV-0033994_44	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0033994_44	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0033994_44	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0033994_45	PHROG	phrog_32635	NA	unknown function
UHGV-0033994_45	UniRef90	UniRef90_UPI001D06D384	SH3 domain-containing protein	NA
UHGV-0033994_45	eggNOG-mapper	97139.C824_05948	NA	NA
UHGV-0033994_45	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0033994_47	PHROG	phrog_199	holin	lysis
UHGV-0033994_47	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-0033994_47	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0033994_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0033994_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0033994_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0033994_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0033994_51	PHROG	phrog_30034	NA	unknown function
UHGV-0033994_51	UniRef90	UniRef90_A0A6N2WHD6	Carbohydrate binding domain protein	NA
UHGV-0033994_51	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0033994_51	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0033994_52	eggNOG-mapper	1306406.ASHX01000002_gene5056	to chymotrypsin. May be specialized for the degradation of chitin- linked proteins. Has a primary specificity for large aliphatic or aromatic amino acids	NA
UHGV-0033994_52	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0033994_52	COG	COG3979	Chitodextrinase	NA
UHGV-0033994_53	KOfam	K14059	int; integrase	NA
UHGV-0033994_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0033994_53	UniRef90	UniRef90_A0A7X9UBW7	Site-specific integrase	NA
UHGV-0033994_53	eggNOG-mapper	445975.COLSTE_01092	Belongs to the 'phage' integrase family	NA
UHGV-0033994_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0033994_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0033994_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0033994_53	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0033994_58	PHROG	phrog_9994	NA	unknown function
UHGV-0033994_58	UniRef90	UniRef90_UPI00189FD7EF	RICIN domain-containing protein	NA
UHGV-0033994_58	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0033994_59	PHROG	phrog_538	minor tail protein	tail
UHGV-0033994_59	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0033994_59	eggNOG-mapper	1435051.BMOU_0222	NA	NA
UHGV-0033994_59	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0033994_60	eggNOG-mapper	1111121.HMPREF1247_0012	NA	NA
UHGV-0033994_60	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0033994_61	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0033994_61	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0033994_61	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0033994_61	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0033994_61	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0033994_61	COG	COG1340	NA	NA
UHGV-0033994_61	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0033994_64	PHROG	phrog_88	major tail protein	tail
UHGV-0033994_64	UniRef90	UniRef90_A0A3E3DZR5	Phage tail protein	NA
UHGV-0033994_64	eggNOG-mapper	926561.KB900622_gene639	phage major tail protein, phi13 family	NA
UHGV-0033994_64	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0033994_64	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0033994_65	eggNOG-mapper	665956.HMPREF1032_02260	NA	NA
UHGV-0033994_65	Structural annotation	PF09646	NA	NA
UHGV-0033994_66	UniRef90	UniRef90_UPI00102F7E90	HK97 gp10 family phage protein	NA
UHGV-0033994_66	eggNOG-mapper	411460.RUMTOR_00474	NA	NA
UHGV-0033994_66	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0033994_67	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0033994_67	UniRef90	UniRef90_A0A5S5BQ76	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0033994_67	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-0033994_67	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0033994_68	PHROG	phrog_5223	neck protein	connector
UHGV-0033994_68	UniRef90	UniRef90_A0A1L8I5X8	DNA-packaging protein	NA
UHGV-0033994_68	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0033994_68	Structural annotation	TIGR01560	NA	NA
UHGV-0033994_69	PHROG	phrog_10	major head protein	head and packaging
UHGV-0033994_69	UniRef90	UniRef90_C9LCN3	Phage major capsid protein, HK97 family	NA
UHGV-0033994_69	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0033994_69	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0033994_69	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0033994_69	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0033994_69	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0033994_70	KOfam	K06904	NA	NA
UHGV-0033994_70	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0033994_70	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0033994_70	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0033994_70	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0033994_70	COG	COG3740	Phage head maturation protease	NA
UHGV-0033994_70	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0033994_71	PHROG	phrog_12	portal protein	head and packaging
UHGV-0033994_71	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0033994_71	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0033994_71	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0033994_71	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0033994_71	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0033994_72	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0033994_72	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-0033994_72	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0033994_72	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0033994_72	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0033994_72	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0033994_72	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0033994_74	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0033994_74	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0033994_74	UniRef90	UniRef90_A0A6M8G6K3	HNH endonuclease	NA
UHGV-0033994_74	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-0033994_74	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0033994_74	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA