UHGV-0034189

Genome information

Genome length 33,467 bps

CDS count 50

Completeness 98.05% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034189
vOTU ID	vOTU-060259
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_L_3_1264__NODE_1863_length_33467_cov_88.657173
BioSample	SAMEA4765718
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.35
Jumbo phage	No

Genome content
Genome length	33,467 bps
GC content	60.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.08%
Average CDS length	634.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034189_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034189_1	UniRef90	UniRef90_UPI001958184D	HNH endonuclease	NA
UHGV-0034189_1	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0034189_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0034189_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0034189_2	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0034189_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0034189_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0034189_2	Structural annotation	PF14205	NA	NA
UHGV-0034189_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0034189_3	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0034189_3	Structural annotation	PF01446	NA	NA
UHGV-0034189_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034189_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0034189_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034189_12	COG	COG5012	Methanogenic corrinoid protein MtbC1	NA
UHGV-0034189_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0034189_14	PHROG	phrog_27290	NA	unknown function
UHGV-0034189_14	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0034189_14	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0034189_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0034189_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0034189_14	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0034189_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0034189_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0034189_15	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0034189_15	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0034189_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0034189_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0034189_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0034189_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0034189_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0034189_17	UniRef90	UniRef90_A0A1Y3ZTC3	DNA helicase	NA
UHGV-0034189_17	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0034189_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0034189_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0034189_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0034189_17	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0034189_18	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0034189_18	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0034189_18	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0034189_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0034189_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0034189_18	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0034189_19	Structural annotation	PF21327	NA	NA
UHGV-0034189_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034189_21	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0034189_21	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0034189_21	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0034189_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0034189_21	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0034189_21	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0034189_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034189_22	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0034189_22	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0034189_22	eggNOG-mapper	1226322.HMPREF1545_02518	Helix-turn-helix XRE-family like proteins	NA
UHGV-0034189_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034189_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0034189_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0034189_23	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0034189_23	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0034189_23	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-0034189_23	eggNOG-mapper	1410674.JNKU01000049_gene1948	EXOIII	NA
UHGV-0034189_23	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0034189_23	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0034189_23	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0034189_23	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0034189_23	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0034189_23	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0034189_24	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0034189_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0034189_24	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0034189_26	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0034189_26	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0034189_27	KOfam	K14059	int; integrase	NA
UHGV-0034189_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0034189_27	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0034189_27	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0034189_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0034189_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0034189_27	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0034189_30	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-0034189_30	PHROG	phrog_9589	endolysin	lysis
UHGV-0034189_30	UniRef90	UniRef90_UPI000A02B331	CHAP domain-containing protein	NA
UHGV-0034189_30	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0034189_30	Pfam	PF05257	CHAP domain	CHAP
UHGV-0034189_30	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0034189_30	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0034189_30	Structural annotation	PF01471, PF06940, TIGR02594, NF038080, COG3942	NA	NA
UHGV-0034189_31	PHROG	phrog_881	holin	lysis
UHGV-0034189_31	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0034189_31	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0034189_31	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0034189_31	Structural annotation	PF16938	NA	NA
UHGV-0034189_32	PHROG	phrog_4105	NA	unknown function
UHGV-0034189_32	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0034189_32	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0034189_33	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0034189_33	PHROG	phrog_7158	NA	unknown function
UHGV-0034189_33	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0034189_33	eggNOG-mapper	862514.HMPREF0623_0302	Calcineurin-like phosphoesterase	NA
UHGV-0034189_33	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0034189_34	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0034189_34	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0034189_35	UniRef90	UniRef90_A0A3A6E2U3	NA	NA
UHGV-0034189_35	Structural annotation	PF10651	NA	NA
UHGV-0034189_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0034189_36	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0034189_36	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0034189_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0034189_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0034189_36	COG	COG4926	Phage-related protein	NA
UHGV-0034189_36	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0034189_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0034189_37	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0034189_37	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0034189_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0034189_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0034189_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0034189_38	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0034189_38	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0034189_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0034189_38	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0034189_41	PHROG	phrog_88	major tail protein	tail
UHGV-0034189_41	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0034189_41	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0034189_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0034189_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0034189_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0034189_42	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0034189_42	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0034189_42	Structural annotation	TIGR01725	NA	NA
UHGV-0034189_43	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0034189_43	Structural annotation	PF05657	NA	NA
UHGV-0034189_44	PHROG	phrog_19734	NA	unknown function
UHGV-0034189_44	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0034189_44	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0034189_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0034189_45	PHROG	phrog_749	NA	unknown function
UHGV-0034189_45	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0034189_45	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0034189_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0034189_46	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0034189_46	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0034189_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0034189_46	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0034189_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0034189_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0034189_46	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0034189_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0034189_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0034189_47	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0034189_47	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0034189_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0034189_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0034189_47	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0034189_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-0034189_48	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0034189_48	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0034189_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0034189_48	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0034189_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0034189_48	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0034189_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0034189_49	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0034189_49	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0034189_49	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0034189_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0034189_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0034189_49	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0034189_50	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0034189_50	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA