UHGV-0034340

Genome information

vOTU vOTU-011906

Genome length 44,957 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034340
vOTU ID	vOTU-011906
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_12_1545__NODE_1320_length_44957_cov_16.948284
BioSample	SAMEA4765835
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.51
Jumbo phage	No

Genome content
Genome length	44,957 bps
GC content	40.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.10%
Average CDS length	613.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034340_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0034340_1	PHROG	phrog_1493	endolysin	lysis
UHGV-0034340_1	UniRef90	UniRef90_UPI001D091812	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0034340_1	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0034340_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0034340_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0034340_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0034340_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0034340_2	PHROG	phrog_33625	holin	lysis
UHGV-0034340_2	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-0034340_2	eggNOG-mapper	665959.HMPREF1013_00186	Bacteriophage holin	NA
UHGV-0034340_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0034340_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0034340_2	COG	COG5546	NA	NA
UHGV-0034340_2	Structural annotation	COG5546	NA	NA
UHGV-0034340_3	eggNOG-mapper	1211844.CBLM010000023_gene975	NA	NA
UHGV-0034340_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0034340_5	PHROG	phrog_18126	NA	unknown function
UHGV-0034340_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0034340_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0034340_6	UniRef90	UniRef90_UPI00189C54DF	RNA-directed DNA polymerase	NA
UHGV-0034340_6	eggNOG-mapper	742740.HMPREF9474_02336	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0034340_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0034340_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0034340_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0034340_6	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0034340_7	PHROG	phrog_5302	tail protein	tail
UHGV-0034340_7	UniRef90	UniRef90_A0A564WU27	Chromosome partition protein Smc	NA
UHGV-0034340_7	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0034340_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0034340_9	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0034340_10	PHROG	phrog_18725	NA	unknown function
UHGV-0034340_10	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0034340_11	PHROG	phrog_13879	NA	unknown function
UHGV-0034340_11	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0034340_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0034340_12	PHROG	phrog_1194	NA	unknown function
UHGV-0034340_12	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-0034340_12	Pfam	PF20458	NA	DUF6711
UHGV-0034340_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0034340_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0034340_13	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0034340_13	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0034340_13	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0034340_14	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0034340_15	UniRef90	UniRef90_A0A1C0ADY7	NA	NA
UHGV-0034340_15	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0034340_15	Pfam	PF16478	NA	DUF5055
UHGV-0034340_15	Structural annotation	PF16478	NA	NA
UHGV-0034340_16	PHROG	phrog_158	major tail protein	tail
UHGV-0034340_16	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0034340_16	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0034340_16	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0034340_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0034340_17	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0034340_17	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0034340_18	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0034340_19	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0034340_20	UniRef90	UniRef90_D7GNV9	Phage QLRG family, putative DNA packaging	NA
UHGV-0034340_20	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0034340_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0034340_20	Structural annotation	TIGR01560	NA	NA
UHGV-0034340_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0034340_21	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0034340_21	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0034340_21	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0034340_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0034340_23	UniRef90	UniRef90_A0A1C5MXM2	Phage portal protein, SPP1 family	NA
UHGV-0034340_23	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0034340_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0034340_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0034340_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0034340_24	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0034340_24	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0034340_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0034340_24	COG	COG5410	NA	NA
UHGV-0034340_24	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0034340_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0034340_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0034340_25	UniRef90	UniRef90_A0A1C5MXG4	Transposon Tn3 resolvase	NA
UHGV-0034340_25	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0034340_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0034340_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0034340_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0034340_25	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0034340_26	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0034340_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034340_27	eggNOG-mapper	1121091.AUMP01000032_gene3074	Phage-related protein	NA
UHGV-0034340_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0034340_31	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0034340_40	PHROG	phrog_22740	NA	unknown function
UHGV-0034340_40	UniRef90	UniRef90_A0A174XE96	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-0034340_40	eggNOG-mapper	1235793.C809_02648	DNA N-6-adenine-methyltransferase	NA
UHGV-0034340_40	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0034340_40	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0034340_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0034340_41	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0034340_41	UniRef90	UniRef90_A0A373VYY6	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0034340_41	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-0034340_41	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0034340_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0034340_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0034340_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0034340_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0034340_43	UniRef90	UniRef90_G9WTJ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0034340_43	eggNOG-mapper	1408415.JHXL01000003_gene1146	COG0270 Site-specific DNA methylase	NA
UHGV-0034340_43	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0034340_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0034340_43	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0034340_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0034340_44	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0034340_44	UniRef90	UniRef90_D7GNU9	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-0034340_44	eggNOG-mapper	431943.CKL_3236	Phage plasmid primase, P4 family	NA
UHGV-0034340_44	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0034340_44	Pfam	PF19263	NA	DUF5906
UHGV-0034340_44	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0034340_44	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0034340_44	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0034340_44	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0034340_45	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0034340_45	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0034340_45	UniRef90	UniRef90_A0A1C5MWG4	mRNA interferase MazF4	NA
UHGV-0034340_45	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0034340_45	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0034340_45	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0034340_45	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0034340_48	PHROG	phrog_3878	NA	unknown function
UHGV-0034340_50	PHROG	phrog_22292	NA	unknown function
UHGV-0034340_51	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-0034340_51	PHROG	phrog_24834	NA	unknown function
UHGV-0034340_51	UniRef90	UniRef90_UPI001C0E48F5	radical SAM protein	NA
UHGV-0034340_51	eggNOG-mapper	1122173.AXVL01000039_gene2445	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-0034340_51	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0034340_51	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-0034340_51	Structural annotation	PF04055, MF_01849, TIGR00048, COG0820	NA	NA
UHGV-0034340_53	PHROG	phrog_7024	NA	unknown function
UHGV-0034340_54	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0034340_54	UniRef90	UniRef90_A0A1C0AE21	DNA primase	NA
UHGV-0034340_54	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0034340_54	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0034340_54	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0034340_54	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0034340_55	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0034340_58	PHROG	phrog_236	nucleotide kinase	other
UHGV-0034340_58	UniRef90	UniRef90_A0A8D9PGN7	Nucelotide kinase	NA
UHGV-0034340_58	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0034340_58	Pfam	PF11753	NA	DUF3310
UHGV-0034340_58	Structural annotation	PF11753	NA	NA
UHGV-0034340_59	Structural annotation	PF05037	NA	NA
UHGV-0034340_60	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034340_60	UniRef90	UniRef90_D7GXC5	Phage-related protein, predicted endonuclease	NA
UHGV-0034340_60	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0034340_60	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0034340_60	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0034340_60	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0034340_61	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0034340_61	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0034340_61	Structural annotation	PF12643, MF_00374, TIGR03188, COG0140	NA	NA
UHGV-0034340_62	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0034340_62	UniRef90	UniRef90_D7GXC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-0034340_62	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0034340_62	Pfam	PF04404	ERF superfamily	ERF
UHGV-0034340_62	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0034340_62	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0034340_63	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0034340_63	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0034340_63	UniRef90	UniRef90_D7GXC3	DNA or RNA helicases of superfamily II	NA
UHGV-0034340_63	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0034340_63	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0034340_63	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0034340_63	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0034340_63	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0034340_63	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0034340_64	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0034340_64	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0034340_64	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0034340_64	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0034340_66	UniRef90	UniRef90_A0A417IKZ6	DNA-binding protein	NA
UHGV-0034340_66	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA