UHGV-0034656

Genome information

Genome length 36,244 bps

CDS count 55

Completeness 85.17% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034656
vOTU ID	vOTU-032626
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_731
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.74
Jumbo phage	No

Genome content
Genome length	36,244 bps
GC content	39.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.70%
Average CDS length	620.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034656_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0034656_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0034656_1	UniRef90	UniRef90_A0A350S6L5	Recombinase family protein	NA
UHGV-0034656_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0034656_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0034656_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0034656_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0034656_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0034656_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0034656_3	PHROG	phrog_2700	NA	unknown function
UHGV-0034656_3	UniRef90	UniRef90_UPI000E4C0E6C	SHOCT domain-containing protein	NA
UHGV-0034656_3	eggNOG-mapper	1145276.T479_01755	Short C-terminal domain	NA
UHGV-0034656_3	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0034656_3	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0034656_3	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0034656_4	PHROG	phrog_87	metallo-protease	other
UHGV-0034656_4	UniRef90	UniRef90_UPI000E4A4CF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0034656_4	eggNOG-mapper	411470.RUMGNA_03100	NA	NA
UHGV-0034656_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0034656_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0034656_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0034656_5	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0034656_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0034656_5	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0034656_5	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0034656_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034656_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0034656_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0034656_6	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0034656_6	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0034656_6	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0034656_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0034656_7	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0034656_7	Structural annotation	PF12441, NF041793, COG3905	NA	NA
UHGV-0034656_13	PHROG	phrog_14970	NA	unknown function
UHGV-0034656_13	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0034656_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0034656_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0034656_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0034656_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0034656_14	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0034656_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0034656_15	PHROG	phrog_7566	NA	unknown function
UHGV-0034656_15	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0034656_15	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0034656_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0034656_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0034656_16	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0034656_16	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0034656_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0034656_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0034656_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0034656_17	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0034656_18	PHROG	phrog_16304	NA	unknown function
UHGV-0034656_18	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0034656_18	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0034656_18	AcrCatalog	cluster_38323	NA	NA
UHGV-0034656_18	Pfam	PF19808	NA	DUF6291
UHGV-0034656_18	Structural annotation	PF19808	NA	NA
UHGV-0034656_20	PHROG	phrog_18361	NA	unknown function
UHGV-0034656_20	UniRef90	UniRef90_E0M0I7	Putative morphogenetic protein	NA
UHGV-0034656_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0034656_21	Structural annotation	PF11184	NA	NA
UHGV-0034656_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0034656_23	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0034656_23	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0034656_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0034656_23	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0034656_24	PHROG	phrog_14088	NA	unknown function
UHGV-0034656_24	UniRef90	UniRef90_UPI000E4EAB4B	carboxypeptidase	NA
UHGV-0034656_24	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0034656_25	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0034656_25	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0034656_25	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0034656_25	Pfam	PF13643	NA	DUF4145
UHGV-0034656_25	Structural annotation	PF13643	NA	NA
UHGV-0034656_26	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0034656_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0034656_26	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0034656_26	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0034656_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0034656_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0034656_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0034656_26	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0034656_27	PHROG	phrog_17690	NA	unknown function
UHGV-0034656_27	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0034656_27	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0034656_28	PHROG	phrog_8684	NA	unknown function
UHGV-0034656_28	UniRef90	UniRef90_UPI000E4794A6	YopX family protein	NA
UHGV-0034656_28	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0034656_28	Pfam	PF09643	YopX protein	YopX
UHGV-0034656_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0034656_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0034656_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0034656_30	UniRef90	UniRef90_UPI000E4AB9DB	Lar family restriction alleviation protein	NA
UHGV-0034656_30	eggNOG-mapper	1226322.HMPREF1545_00021	Restriction alleviation protein Lar	NA
UHGV-0034656_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0034656_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0034656_30	Structural annotation	PF13211	NA	NA
UHGV-0034656_32	PHROG	phrog_33130	NA	unknown function
UHGV-0034656_32	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0034656_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0034656_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0034656_34	UniRef90	UniRef90_UPI000E54849E	PBSX family phage terminase large subunit	NA
UHGV-0034656_34	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0034656_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0034656_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0034656_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0034656_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0034656_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0034656_34	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0034656_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0034656_35	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0034656_35	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0034656_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0034656_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0034656_36	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0034656_36	eggNOG-mapper	663278.Ethha_0493	Minor capsid protein	NA
UHGV-0034656_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0034656_36	Structural annotation	PF11114	NA	NA
UHGV-0034656_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0034656_37	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0034656_37	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0034656_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0034656_37	COG	COG2369	NA	NA
UHGV-0034656_37	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0034656_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0034656_39	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0034656_39	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0034656_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0034656_39	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0034656_40	PHROG	phrog_283	major head protein	head and packaging
UHGV-0034656_40	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0034656_40	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0034656_40	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0034656_40	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0034656_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0034656_42	PHROG	phrog_3366	NA	unknown function
UHGV-0034656_42	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0034656_42	Pfam	PF20536	NA	DUF6751
UHGV-0034656_42	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0034656_43	PHROG	phrog_3266	tail completion	connector
UHGV-0034656_43	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-0034656_43	Structural annotation	PF12691	NA	NA
UHGV-0034656_44	PHROG	phrog_3099	NA	unknown function
UHGV-0034656_44	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0034656_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0034656_45	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0034656_45	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0034656_45	Structural annotation	PF10666	NA	NA
UHGV-0034656_46	PHROG	phrog_706	NA	unknown function
UHGV-0034656_46	UniRef90	UniRef90_UPI000E4C3E72	Gp15 family bacteriophage protein	NA
UHGV-0034656_46	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0034656_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0034656_46	Structural annotation	PF06854	NA	NA
UHGV-0034656_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0034656_47	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0034656_47	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0034656_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0034656_48	PHROG	phrog_1194	NA	unknown function
UHGV-0034656_48	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0034656_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0034656_49	PHROG	phrog_13879	NA	unknown function
UHGV-0034656_49	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0034656_49	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0034656_51	PHROG	phrog_18725	NA	unknown function
UHGV-0034656_51	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0034656_52	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0034656_52	UniRef90	UniRef90_UPI000E52B44D	tail fiber domain-containing protein	NA
UHGV-0034656_52	eggNOG-mapper	397288.C806_00116	NA	NA
UHGV-0034656_52	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0034656_53	PHROG	phrog_199	holin	lysis
UHGV-0034656_53	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-0034656_53	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0034656_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0034656_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0034656_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0034656_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0034656_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0034656_54	PHROG	phrog_435	endolysin	lysis
UHGV-0034656_54	UniRef90	UniRef90_A0A416Z2X7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0034656_54	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-0034656_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0034656_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0034656_54	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA