UHGV-0034752

Genome information

Genome length 35,291 bps

CDS count 54

Completeness 94.15% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034752
vOTU ID	vOTU-075126
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_5_THA1056YZ__NODE_1616_length_35291_cov_31.124837
BioSample	SAMEA4969186
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.15% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.31
Jumbo phage	No

Genome content
Genome length	35,291 bps
GC content	53.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.48%
Average CDS length	602.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034752_1	PHROG	phrog_1066	NA	unknown function
UHGV-0034752_1	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0034752_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0034752_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0034752_2	UniRef90	UniRef90_A0A1H4BNS6	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0034752_2	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0034752_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0034752_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0034752_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0034752_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0034752_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0034752_3	UniRef90	UniRef90_A0A1H4BNH5	Phage portal protein, HK97 family	NA
UHGV-0034752_3	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-0034752_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0034752_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0034752_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0034752_4	KOfam	K06904	NA	NA
UHGV-0034752_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0034752_4	UniRef90	UniRef90_R6CCZ0	Phage prohead protease HK97 family	NA
UHGV-0034752_4	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0034752_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0034752_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0034752_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0034752_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0034752_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0034752_5	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0034752_5	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0034752_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0034752_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0034752_5	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0034752_6	PHROG	phrog_5223	neck protein	connector
UHGV-0034752_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0034752_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0034752_7	UniRef90	UniRef90_A0A1T5EG23	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0034752_7	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0034752_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0034752_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0034752_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0034752_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0034752_8	UniRef90	UniRef90_UPI00148B2708	HK97 gp10 family phage protein	NA
UHGV-0034752_8	eggNOG-mapper	198094.BA_0472	NA	NA
UHGV-0034752_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0034752_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0034752_9	PHROG	phrog_78	tail terminator	connector
UHGV-0034752_9	eggNOG-mapper	887929.HMP0721_1261	NA	NA
UHGV-0034752_9	Structural annotation	PF20765	NA	NA
UHGV-0034752_10	PHROG	phrog_88	major tail protein	tail
UHGV-0034752_10	UniRef90	UniRef90_A0A3D5L5I4	Phage tail protein	NA
UHGV-0034752_10	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0034752_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0034752_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0034752_11	eggNOG-mapper	1280681.AUJZ01000038_gene340	NA	NA
UHGV-0034752_11	Structural annotation	PF11836	NA	NA
UHGV-0034752_12	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0034752_12	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0034752_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0034752_12	Structural annotation	PF10145, COG5280	NA	NA
UHGV-0034752_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0034752_13	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0034752_13	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0034752_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0034752_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0034752_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0034752_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0034752_14	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0034752_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0034752_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0034752_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0034752_14	COG	COG4926	Phage-related protein	NA
UHGV-0034752_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0034752_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0034752_18	PHROG	phrog_1863	NA	unknown function
UHGV-0034752_18	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0034752_19	PHROG	phrog_1129	holin	lysis
UHGV-0034752_19	UniRef90	UniRef90_A0A1H3XEH1	Phage holin family Hol44, holin superfamily V	NA
UHGV-0034752_19	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0034752_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0034752_19	Structural annotation	PF06946	NA	NA
UHGV-0034752_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0034752_20	PHROG	phrog_291	endolysin	lysis
UHGV-0034752_20	UniRef90	UniRef90_A0A6S6X8V6	Putative Lysozyme	NA
UHGV-0034752_20	eggNOG-mapper	1415775.U729_2621	Glycosyl hydrolases family 25	NA
UHGV-0034752_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0034752_20	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0034752_20	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0034752_20	COG	COG3103	NA	NA
UHGV-0034752_20	Structural annotation	PF01183, PF19127, TIGR04035, TIGR04303, COG3757	NA	NA
UHGV-0034752_21	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0034752_21	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0034752_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034752_22	UniRef90	UniRef90_A0A1I3T111	AP2 domain-containing protein	NA
UHGV-0034752_22	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0034752_22	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0034752_23	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0034752_23	PHROG	phrog_2104	NA	unknown function
UHGV-0034752_23	UniRef90	UniRef90_A0A355NLF8	DNA-binding protein	NA
UHGV-0034752_23	eggNOG-mapper	1121296.JONJ01000006_gene2191	Helix-turn-helix XRE-family like proteins	NA
UHGV-0034752_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034752_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0034752_27	PHROG	phrog_22984	NA	unknown function
UHGV-0034752_28	PHROG	phrog_16490	NA	unknown function
UHGV-0034752_28	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0034752_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0034752_30	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0034752_31	KOfam	K14059	int; integrase	NA
UHGV-0034752_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0034752_31	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0034752_31	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-0034752_31	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0034752_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0034752_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0034752_31	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0034752_32	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0034752_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034752_33	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0034752_33	UniRef90	UniRef90_A0A413QMZ1	XRE family transcriptional regulator	NA
UHGV-0034752_33	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0034752_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0034752_33	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0034752_38	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0034752_38	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0034752_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0034752_43	PHROG	phrog_7964	NA	unknown function
UHGV-0034752_43	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-0034752_43	eggNOG-mapper	1280692.AUJL01000012_gene3222	NA	NA
UHGV-0034752_43	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0034752_43	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0034752_44	Structural annotation	PF00412	NA	NA
UHGV-0034752_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034752_45	UniRef90	UniRef90_UPI001BB47349	YqaJ viral recombinase family protein	NA
UHGV-0034752_45	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0034752_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0034752_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0034752_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0034752_45	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0034752_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0034752_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0034752_46	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0034752_46	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0034752_46	Pfam	PF03837	RecT family	RecT
UHGV-0034752_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0034752_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0034752_46	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0034752_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0034752_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0034752_47	UniRef90	UniRef90_A0A2V2CEG7	Single-stranded DNA-binding protein	NA
UHGV-0034752_47	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0034752_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0034752_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0034752_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0034752_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0034752_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0034752_48	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0034752_48	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0034752_48	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0034752_49	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0034752_49	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0034752_49	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0034752_49	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0034752_51	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0034752_51	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0034752_52	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0034752_52	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0034752_52	UniRef90	UniRef90_UPI001C0E8FB7	site-specific DNA-methyltransferase	NA
UHGV-0034752_52	eggNOG-mapper	910314.HMPREF9220_0624	DNA methylase	NA
UHGV-0034752_52	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0034752_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0034752_52	COG	COG0863	DNA modification methylase	NA
UHGV-0034752_52	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0034752_53	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0034752_53	AcrCatalog	cluster_11670	NA	NA
UHGV-0034752_54	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0034752_54	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034752_54	UniRef90	UniRef90_UPI001D11B139	HNH endonuclease	NA
UHGV-0034752_54	eggNOG-mapper	1444310.JANV01000004_gene2686	HNH endonuclease	NA
UHGV-0034752_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0034752_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA