UHGV-0034798

Genome information

vOTU vOTU-061932

Genome length 41,052 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034798
vOTU ID	vOTU-061932
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_12_1556__NODE_2287_length_41052_cov_31.420378
BioSample	SAMEA4765846
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.35
Jumbo phage	No

Genome content
Genome length	41,052 bps
GC content	52.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	87.98%
Average CDS length	533.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034798_2	PHROG	phrog_3136	NA	unknown function
UHGV-0034798_2	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0034798_2	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0034798_2	Pfam	PF04266	ASCH domain	ASCH
UHGV-0034798_2	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0034798_2	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0034798_3	PHROG	phrog_38832	NA	unknown function
UHGV-0034798_3	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0034798_3	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0034798_4	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0034798_5	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0034798_5	UniRef90	UniRef90_A0A1C5YXG3	Radical SAM superfamily	NA
UHGV-0034798_5	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0034798_5	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0034798_5	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0034798_6	PHROG	phrog_38832	NA	unknown function
UHGV-0034798_6	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0034798_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0034798_10	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0034798_10	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0034798_11	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0034798_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0034798_14	PHROG	phrog_10250	NA	unknown function
UHGV-0034798_14	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0034798_14	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0034798_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0034798_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0034798_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0034798_14	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0034798_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0034798_15	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0034798_15	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0034798_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0034798_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0034798_16	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0034798_16	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0034798_16	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0034798_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0034798_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0034798_16	COG	COG2369	NA	NA
UHGV-0034798_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0034798_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0034798_17	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0034798_17	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0034798_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0034798_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0034798_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0034798_18	PHROG	phrog_29211	NA	unknown function
UHGV-0034798_19	Structural annotation	PF06810	NA	NA
UHGV-0034798_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0034798_20	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0034798_20	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0034798_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0034798_22	PHROG	phrog_17977	NA	unknown function
UHGV-0034798_22	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0034798_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0034798_23	PHROG	phrog_17405	head protein	head and packaging
UHGV-0034798_23	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0034798_23	Structural annotation	PF11367	NA	NA
UHGV-0034798_24	PHROG	phrog_885	major tail protein	tail
UHGV-0034798_24	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0034798_24	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0034798_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0034798_25	PHROG	phrog_18646	NA	unknown function
UHGV-0034798_25	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0034798_25	eggNOG-mapper	1121936.AUHI01000017_gene750	NA	NA
UHGV-0034798_26	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0034798_26	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0034798_26	COG	COG5412	Phage-related protein	NA
UHGV-0034798_26	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0034798_27	UniRef90	UniRef90_UPI00111F6E2C	DNRLRE domain-containing protein	NA
UHGV-0034798_27	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0034798_27	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0034798_28	PHROG	phrog_26795	NA	unknown function
UHGV-0034798_28	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0034798_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0034798_29	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0034798_30	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0034798_30	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0034798_32	UniRef90	UniRef90_A0A1Y4UW55	Branched-chain amino acid ABC transporter permease	NA
UHGV-0034798_32	eggNOG-mapper	1007096.BAGW01000036_gene2665	NA	NA
UHGV-0034798_34	PHROG	phrog_13256	NA	unknown function
UHGV-0034798_34	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0034798_35	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0034798_35	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0034798_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0034798_35	Structural annotation	NF033743	NA	NA
UHGV-0034798_36	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0034798_36	Structural annotation	PF16509, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0034798_37	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0034798_37	PHROG	phrog_9764	NA	unknown function
UHGV-0034798_37	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0034798_37	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0034798_37	PADLOC	AbiQ	AbiQ	Abi
UHGV-0034798_37	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0034798_37	Structural annotation	PF13958	NA	NA
UHGV-0034798_38	KOfam	K07497	K07497; putative transposase	NA
UHGV-0034798_38	PHROG	phrog_157	transposase	integration and excision
UHGV-0034798_38	UniRef90	UniRef90_A0A417H848	IS3 family transposase	NA
UHGV-0034798_38	eggNOG-mapper	931276.Cspa_c04130	Integrase core domain	NA
UHGV-0034798_38	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0034798_38	Pfam	PF00665	Integrase core domain	rve
UHGV-0034798_38	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0034798_38	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0034798_38	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0034798_38	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA
UHGV-0034798_39	UniRef90	UniRef90_A0A417H8C0	Helix-turn-helix domain-containing protein	NA
UHGV-0034798_41	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0034798_44	PHROG	phrog_3754	NA	unknown function
UHGV-0034798_44	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0034798_45	PHROG	phrog_21718	NA	unknown function
UHGV-0034798_45	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0034798_46	PHROG	phrog_22984	NA	unknown function
UHGV-0034798_47	PHROG	phrog_16490	NA	unknown function
UHGV-0034798_47	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0034798_48	PHROG	phrog_20016	NA	unknown function
UHGV-0034798_48	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0034798_48	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0034798_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0034798_49	Structural annotation	PF12510	NA	NA
UHGV-0034798_50	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0034798_51	KOfam	K14059	int; integrase	NA
UHGV-0034798_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0034798_51	UniRef90	UniRef90_UPI001874116E	tyrosine-type recombinase/integrase	NA
UHGV-0034798_51	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0034798_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0034798_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0034798_51	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0034798_52	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0034798_52	UniRef90	UniRef90_A0A3D3Y4M8	HTH cro/C1-type domain-containing protein	NA
UHGV-0034798_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034798_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0034798_52	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0034798_53	eggNOG-mapper	457415.HMPREF1006_00639	nuclease	NA
UHGV-0034798_53	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0034798_53	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0034798_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034798_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0034798_55	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0034798_55	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0034798_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034798_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0034798_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0034798_57	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0034798_57	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0034798_57	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0034798_62	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0034798_62	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0034798_62	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0034798_62	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0034798_62	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0034798_62	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0034798_62	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0034798_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0034798_62	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0034798_64	PHROG	phrog_3136	NA	unknown function
UHGV-0034798_64	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0034798_64	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0034798_64	Pfam	PF04266	ASCH domain	ASCH
UHGV-0034798_64	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0034798_64	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0034798_65	PHROG	phrog_38832	NA	unknown function
UHGV-0034798_65	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0034798_65	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0034798_66	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0034798_67	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0034798_67	UniRef90	UniRef90_A0A1C5YXG3	Radical SAM superfamily	NA
UHGV-0034798_67	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0034798_67	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0034798_67	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA