UHGV-0034805

Genome information

Genome length 41,741 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0034805
vOTU ID	vOTU-005142
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_12_1556__NODE_2232_length_41809_cov_13.923416
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.82
Jumbo phage	No

Genome content
Genome length	41,741 bps
GC content	57.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.98%
Average CDS length	626.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0034805_1	Pfam	PF19808	NA	DUF6291
UHGV-0034805_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0034805_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0034805_2	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0034805_2	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0034805_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0034805_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0034805_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0034805_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0034805_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0034805_3	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034805_3	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0034805_3	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0034805_3	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0034805_7	Structural annotation	PF19885	NA	NA
UHGV-0034805_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034805_10	eggNOG-mapper	1367847.JCM7686_2808	Helix-turn-helix XRE-family like proteins	NA
UHGV-0034805_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034805_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0034805_14	PHROG	phrog_4392	NA	unknown function
UHGV-0034805_14	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0034805_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0034805_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0034805_18	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0034805_18	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0034805_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034805_20	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0034805_21	KOfam	K14059	int; integrase	NA
UHGV-0034805_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0034805_21	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-0034805_21	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0034805_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0034805_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0034805_21	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0034805_22	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0034805_25	UniRef90	UniRef90_A0A6G3M2L8	CopG family transcriptional regulator	NA
UHGV-0034805_25	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0034805_25	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0034805_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0034805_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0034805_27	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0034805_27	eggNOG-mapper	445971.ANASTE_00714	BRO family, N-terminal domain	NA
UHGV-0034805_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0034805_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0034805_27	COG	COG3617	Prophage antirepressor	NA
UHGV-0034805_27	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0034805_28	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0034805_29	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0034805_30	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0034805_31	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0034805_31	Structural annotation	PF11650	NA	NA
UHGV-0034805_32	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0034805_32	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0034805_32	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0034805_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0034805_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0034805_33	UniRef90	UniRef90_A0A6A8VHX7	Terminase_3 domain-containing protein	NA
UHGV-0034805_33	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0034805_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0034805_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0034805_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0034805_35	PHROG	phrog_4105	NA	unknown function
UHGV-0034805_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0034805_38	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0034805_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0034805_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0034805_40	UniRef90	UniRef90_UPI00082A3F03	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0034805_40	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0034805_40	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0034805_40	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0034805_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0034805_42	PHROG	phrog_1794	amidase	lysis
UHGV-0034805_42	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0034805_42	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0034805_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0034805_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0034805_42	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0034805_43	PHROG	phrog_9233	holin	lysis
UHGV-0034805_43	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0034805_43	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0034805_43	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0034805_43	Structural annotation	PF16938	NA	NA
UHGV-0034805_47	PHROG	phrog_15863	NA	unknown function
UHGV-0034805_47	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0034805_47	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0034805_47	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0034805_48	Structural annotation	PF00512	NA	NA
UHGV-0034805_49	Structural annotation	PF17917	NA	NA
UHGV-0034805_50	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0034805_50	UniRef90	UniRef90_A0A0R2ALL0	HNHc domain-containing protein	NA
UHGV-0034805_50	eggNOG-mapper	1274524.BSONL12_04374	HNH endonuclease	NA
UHGV-0034805_50	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0034805_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0034805_51	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0034805_51	UniRef90	UniRef90_A0A173SKQ6	Holliday junction resolvase	NA
UHGV-0034805_51	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0034805_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0034805_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0034805_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0034805_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0034805_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0034805_52	UniRef90	UniRef90_A0A645DSK7	Single-stranded DNA-binding protein	NA
UHGV-0034805_52	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0034805_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0034805_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0034805_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0034805_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0034805_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0034805_56	PHROG	phrog_4019	NA	unknown function
UHGV-0034805_57	Structural annotation	NF041588	NA	NA
UHGV-0034805_59	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0034805_59	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0034805_60	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0034805_60	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0034805_60	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0034805_60	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0034805_60	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0034805_60	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0034805_60	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0034805_61	PHROG	phrog_16304	NA	unknown function
UHGV-0034805_61	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0034805_61	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0034805_61	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA