UHGV-0035008

Genome information

Genome length 38,716 bps

CDS count 59

Completeness 98.07% (high-quality)

geNomad score 0.9509

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035008
vOTU ID	vOTU-079957
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_16_1564__NODE_1290_length_38716_cov_5.068299
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9509
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.54
Jumbo phage	No

Genome content
Genome length	38,716 bps
GC content	40.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.54%
Average CDS length	591.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035008_1	PHROG	phrog_2649	endolysin	lysis
UHGV-0035008_1	UniRef90	UniRef90_UPI001D091A6B	peptidoglycan-binding protein	NA
UHGV-0035008_1	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0035008_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0035008_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0035008_1	Structural annotation	PF03412, PF01471, COG3271	NA	NA
UHGV-0035008_2	PHROG	phrog_37799	NA	unknown function
UHGV-0035008_2	UniRef90	UniRef90_UPI001D06EF5F	phage holin family protein	NA
UHGV-0035008_2	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0035008_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0035008_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0035008_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0035008_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0035008_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0035008_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0035008_3	UniRef90	UniRef90_UPI001D06F379	tyrosine-type recombinase/integrase	NA
UHGV-0035008_3	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0035008_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0035008_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035008_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0035008_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0035008_5	eggNOG-mapper	1235793.C809_03661	NA	NA
UHGV-0035008_7	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0035008_8	PHROG	phrog_19695	NA	unknown function
UHGV-0035008_8	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0035008_8	Structural annotation	PF19714	NA	NA
UHGV-0035008_9	PHROG	phrog_9994	NA	unknown function
UHGV-0035008_9	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-0035008_9	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-0035008_9	Structural annotation	PF20747	NA	NA
UHGV-0035008_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0035008_10	UniRef90	UniRef90_UPI001D07456C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0035008_10	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0035008_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0035008_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0035008_11	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0035008_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0035008_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0035008_12	UniRef90	UniRef90_UPI001D06AE33	phage tail tape measure protein	NA
UHGV-0035008_12	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0035008_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035008_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0035008_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035008_13	eggNOG-mapper	1384484.AEQU_1173	NA	NA
UHGV-0035008_14	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-0035008_14	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0035008_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0035008_15	PHROG	phrog_5509	neck protein	connector
UHGV-0035008_15	eggNOG-mapper	1450694.BTS2_0537	NA	NA
UHGV-0035008_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0035008_16	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0035008_17	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0035008_17	UniRef90	UniRef90_UPI001D098732	phage head closure protein	NA
UHGV-0035008_17	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-0035008_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0035008_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0035008_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0035008_18	PHROG	phrog_749	NA	unknown function
UHGV-0035008_18	eggNOG-mapper	926561.KB900622_gene644	NA	NA
UHGV-0035008_18	Structural annotation	PF05135	NA	NA
UHGV-0035008_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035008_19	UniRef90	UniRef90_UPI001D0860FB	phage major capsid protein	NA
UHGV-0035008_19	eggNOG-mapper	553184.ATORI0001_1179	Phage capsid family	NA
UHGV-0035008_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035008_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035008_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035008_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035008_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0035008_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0035008_20	UniRef90	UniRef90_UPI001D08E902	Clp protease ClpP	NA
UHGV-0035008_20	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0035008_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0035008_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0035008_20	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0035008_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035008_21	UniRef90	UniRef90_UPI001D060193	phage portal protein	NA
UHGV-0035008_21	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0035008_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035008_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035008_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035008_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035008_22	UniRef90	UniRef90_UPI001D076CC1	terminase large subunit	NA
UHGV-0035008_22	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0035008_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035008_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035008_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035008_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035008_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0035008_23	UniRef90	UniRef90_UPI001D0732BF	P27 family phage terminase small subunit	NA
UHGV-0035008_23	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0035008_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0035008_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0035008_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035008_24	UniRef90	UniRef90_UPI001D081DF5	HNH endonuclease	NA
UHGV-0035008_24	eggNOG-mapper	1027396.LMOSA_21361	HNH nucleases	NA
UHGV-0035008_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035008_25	eggNOG-mapper	748449.Halha_2167	NA	NA
UHGV-0035008_26	PHROG	phrog_10865	NA	unknown function
UHGV-0035008_26	eggNOG-mapper	743719.PaelaDRAFT_2392	NA	NA
UHGV-0035008_26	Pfam	PF20505	NA	DUF6731
UHGV-0035008_26	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0035008_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0035008_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0035008_30	UniRef90	UniRef90_UPI001D0765D9	single-stranded DNA-binding protein	NA
UHGV-0035008_30	eggNOG-mapper	658086.HMPREF0994_02045	Single-strand binding protein family	NA
UHGV-0035008_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0035008_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0035008_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0035008_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0035008_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0035008_32	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0035008_32	UniRef90	UniRef90_UPI001D06D732	phage/plasmid primase, P4 family	NA
UHGV-0035008_32	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0035008_32	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0035008_32	Pfam	PF19263	NA	DUF5906
UHGV-0035008_32	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0035008_32	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0035008_32	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0035008_32	Structural annotation	PF02257, PF05272, PF08706, MF_01407, NF011296, COG3378	NA	NA
UHGV-0035008_33	PHROG	phrog_398	NA	unknown function
UHGV-0035008_33	UniRef90	UniRef90_UPI001D07CBBD	putative HNHc nuclease	NA
UHGV-0035008_33	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0035008_33	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0035008_33	Structural annotation	PF16784, NF007281	NA	NA
UHGV-0035008_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0035008_34	PHROG	phrog_3502	NA	unknown function
UHGV-0035008_34	UniRef90	UniRef90_A0A849CZS6	LexA repressor	NA
UHGV-0035008_34	eggNOG-mapper	431943.CKL_1579	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0035008_34	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0035008_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0035008_35	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0035008_35	UniRef90	UniRef90_UPI001D06B611	XRE family transcriptional regulator	NA
UHGV-0035008_35	eggNOG-mapper	1121342.AUCO01000012_gene1734	sequence-specific DNA binding	NA
UHGV-0035008_35	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0035008_35	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0035008_38	PHROG	phrog_23747	NA	unknown function
UHGV-0035008_38	UniRef90	UniRef90_A0A7Y9A9N6	Magnesium-transporting ATPase (P-type)	NA
UHGV-0035008_38	Structural annotation	NF040944	NA	NA
UHGV-0035008_39	PHROG	phrog_22292	NA	unknown function
UHGV-0035008_41	PHROG	phrog_15077	NA	unknown function
UHGV-0035008_41	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0035008_41	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0035008_41	Structural annotation	NF038070	NA	NA
UHGV-0035008_43	UniRef90	UniRef90_UPI001D060E3A	helix-turn-helix domain-containing protein	NA
UHGV-0035008_43	eggNOG-mapper	1029718.SFBM_0098	Helix-turn-helix domain	NA
UHGV-0035008_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0035008_43	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0035008_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0035008_47	PHROG	phrog_2116	NA	unknown function
UHGV-0035008_47	eggNOG-mapper	1274524.BSONL12_05998	NA	NA
UHGV-0035008_48	PHROG	phrog_3882	NA	unknown function
UHGV-0035008_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0035008_49	UniRef90	UniRef90_UPI000174E6B8	helix-turn-helix domain-containing protein	NA
UHGV-0035008_49	eggNOG-mapper	293826.Amet_2116	PFAM helix-turn-helix domain protein	NA
UHGV-0035008_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0035008_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035008_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0035008_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0035008_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0035008_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035008_50	UniRef90	UniRef90_UPI001D08933E	helix-turn-helix domain-containing protein	NA
UHGV-0035008_50	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-0035008_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0035008_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035008_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0035008_50	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0035008_51	eggNOG-mapper	1476973.JMMB01000006_gene3332	NA	NA
UHGV-0035008_52	PHROG	phrog_888	NA	unknown function
UHGV-0035008_52	UniRef90	UniRef90_A0A6N7SSL1	NA	NA
UHGV-0035008_52	eggNOG-mapper	1292035.H476_2311	Short C-terminal domain	NA
UHGV-0035008_52	Pfam	PF14471	NA	DUF4428
UHGV-0035008_52	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0035008_52	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0035008_55	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0035008_55	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0035008_55	UniRef90	UniRef90_UPI001D0933C8	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0035008_55	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0035008_55	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0035008_55	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0035008_55	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0035008_56	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0035008_56	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0035008_56	UniRef90	UniRef90_UPI001D07D491	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0035008_56	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0035008_56	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0035008_56	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0035008_56	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0035008_58	KOfam	K14059	int; integrase	NA
UHGV-0035008_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0035008_58	UniRef90	UniRef90_UPI001D087A79	site-specific integrase	NA
UHGV-0035008_58	eggNOG-mapper	693746.OBV_03260	Belongs to the 'phage' integrase family	NA
UHGV-0035008_58	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0035008_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0035008_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035008_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035008_58	Structural annotation	PF00589, PF13102, PF12286, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0035008_59	eggNOG-mapper	1256908.HMPREF0373_01611	Cytoplasmic, score 8.87	NA