UHGV-0035012

Genome information

Genome length 24,989 bps

CDS count 33

Completeness 61.67% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035012
vOTU ID	vOTU-023937
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_5048_length_24989_cov_72.413857
BioSample	SAMEA4969165
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.2
Jumbo phage	No

Genome content
Genome length	24,989 bps
GC content	28.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.30%
Average CDS length	700.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035012_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0035012_1	UniRef90	UniRef90_UPI001E2B0453	phage tail protein	NA
UHGV-0035012_1	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0035012_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0035012_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0035012_1	COG	COG4926	Phage-related protein	NA
UHGV-0035012_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0035012_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0035012_2	UniRef90	UniRef90_UPI001625AB57	phage tail family protein	NA
UHGV-0035012_2	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0035012_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0035012_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0035012_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0035012_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0035012_3	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0035012_3	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0035012_3	UniRef90	UniRef90_UPI00164B849B	phage tail tape measure protein	NA
UHGV-0035012_3	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0035012_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035012_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0035012_3	COG	COG5283	Phage-related tail protein	NA
UHGV-0035012_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035012_4	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0035012_5	PHROG	phrog_88	major tail protein	tail
UHGV-0035012_5	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0035012_5	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0035012_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0035012_5	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0035012_6	PHROG	phrog_78	tail terminator	connector
UHGV-0035012_6	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0035012_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0035012_7	UniRef90	UniRef90_UPI00164C9F08	HK97 gp10 family phage protein	NA
UHGV-0035012_7	eggNOG-mapper	1499684.CCNP01000020_gene2283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0035012_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0035012_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0035012_7	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0035012_8	PHROG	phrog_11176	head-tail adaptor	connector
UHGV-0035012_8	UniRef90	UniRef90_UPI00164ACD7E	phage head closure protein	NA
UHGV-0035012_8	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-0035012_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0035012_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0035012_8	Structural annotation	PF05521, PF07405, TIGR01563, COG5614	NA	NA
UHGV-0035012_9	PHROG	phrog_749	NA	unknown function
UHGV-0035012_9	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0035012_9	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0035012_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035012_10	UniRef90	UniRef90_UPI00164AB0C3	phage major capsid protein	NA
UHGV-0035012_10	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0035012_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035012_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035012_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035012_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035012_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0035012_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0035012_11	UniRef90	UniRef90_A0A316S6S6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0035012_11	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0035012_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0035012_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0035012_11	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0035012_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035012_12	UniRef90	UniRef90_UPI00164CC1C1	phage portal protein	NA
UHGV-0035012_12	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0035012_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035012_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0035012_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035012_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035012_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035012_13	UniRef90	UniRef90_UPI00164CCF79	terminase large subunit	NA
UHGV-0035012_13	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0035012_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035012_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035012_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035012_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035012_14	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0035012_14	UniRef90	UniRef90_UPI00164B2843	RNA polymerase subunit sigma-70	NA
UHGV-0035012_14	eggNOG-mapper	1405.DJ92_861	NA	NA
UHGV-0035012_14	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0035012_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0035012_14	COG	COG5484	NA	NA
UHGV-0035012_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0035012_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035012_15	UniRef90	UniRef90_UPI00164ABAC9	HNH endonuclease	NA
UHGV-0035012_15	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0035012_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0035012_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035012_16	PHROG	phrog_1315	NA	unknown function
UHGV-0035012_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0035012_17	UniRef90	UniRef90_A0A1G9I4W9	Sigma-70, region 4	NA
UHGV-0035012_17	eggNOG-mapper	1196322.A370_01361	DNA-templated transcription, initiation	NA
UHGV-0035012_17	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0035012_17	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0035012_18	PHROG	phrog_25509	NA	unknown function
UHGV-0035012_18	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0035012_20	PHROG	phrog_98	NA	unknown function
UHGV-0035012_20	UniRef90	UniRef90_UPI0018A9284C	YopX family protein	NA
UHGV-0035012_20	eggNOG-mapper	1414720.CBYM010000002_gene585	YopX protein	NA
UHGV-0035012_20	Pfam	PF09643	YopX protein	YopX
UHGV-0035012_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0035012_21	PHROG	phrog_15609	NA	unknown function
UHGV-0035012_21	UniRef90	UniRef90_UPI0018AC339E	NA	NA
UHGV-0035012_21	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0035012_21	Pfam	PF11300	NA	DUF3102
UHGV-0035012_21	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0035012_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0035012_22	PHROG	phrog_8470	NA	unknown function
UHGV-0035012_22	UniRef90	UniRef90_UPI0018AC6B28	PcfJ domain-containing protein	NA
UHGV-0035012_22	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0035012_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0035012_22	Structural annotation	PF14284	NA	NA
UHGV-0035012_23	PHROG	phrog_7445	NA	unknown function
UHGV-0035012_23	UniRef90	UniRef90_UPI0006DC27CB	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0035012_23	eggNOG-mapper	1395513.P343_08075	NA	NA
UHGV-0035012_23	Structural annotation	PF14058	NA	NA
UHGV-0035012_24	PHROG	phrog_824	NA	unknown function
UHGV-0035012_24	UniRef90	UniRef90_UPI00164CCD6E	VRR-NUC domain-containing protein	NA
UHGV-0035012_24	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0035012_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0035012_24	Structural annotation	PF08774	NA	NA
UHGV-0035012_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035012_25	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0035012_25	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0035012_25	Structural annotation	PF21578	NA	NA
UHGV-0035012_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0035012_27	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0035012_27	UniRef90	UniRef90_A0A174DH26	Putative transcriptional regulator	NA
UHGV-0035012_27	eggNOG-mapper	86416.Clopa_3404	helix-turn-helix	NA
UHGV-0035012_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035012_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0035012_27	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0035012_28	PHROG	phrog_20330	NA	unknown function
UHGV-0035012_28	eggNOG-mapper	1094508.Tsac_2450	NA	NA
UHGV-0035012_31	UniRef90	UniRef90_A0A174H177	Helix-turn-helix domain	NA
UHGV-0035012_31	eggNOG-mapper	1262449.CP6013_3168	NA	NA
UHGV-0035012_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0035012_31	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0035012_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0035012_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035012_32	UniRef90	UniRef90_A0A174H601	Helix-turn-helix domain-containing protein	NA
UHGV-0035012_32	eggNOG-mapper	190478.Q8SBN0_9CAUD	sequence-specific DNA binding	NA
UHGV-0035012_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035012_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0035012_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0035012_33	UniRef90	UniRef90_A0A174H5K0	Resolvase family protein	NA
UHGV-0035012_33	eggNOG-mapper	1443122.Z958_07465	resolvase	NA
UHGV-0035012_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0035012_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0035012_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0035012_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0035012_33	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA