UHGV-0035016

Genome information

vOTU vOTU-020798

Genome length 83,024 bps

CDS count 97

Completeness 84.44% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035016
vOTU ID	vOTU-020798
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_17_RAU1014YZ__NODE_425_length_83024_cov_118.876825
BioSample	SAMEA4969175
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.8
Jumbo phage	No

Genome content
Genome length	83,024 bps
GC content	46.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	97
CDS density	88.73%
Average CDS length	759.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035016_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0035016_1	PHROG	phrog_7	endolysin	lysis
UHGV-0035016_1	UniRef90	UniRef90_UPI000D10C356	lysozyme	NA
UHGV-0035016_1	eggNOG-mapper	1284775.HMPREF1640_03565	lysozyme	NA
UHGV-0035016_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0035016_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0035016_3	UniRef90	UniRef90_R6YPV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0035016_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0035016_4	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0035016_4	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0035016_4	UniRef90	UniRef90_A0A413UUX1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0035016_4	eggNOG-mapper	517433.PanABDRAFT_4268	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0035016_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0035016_4	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0035016_4	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0035016_5	UniRef90	UniRef90_A0A7Y5JE15	Helix-turn-helix transcriptional regulator	NA
UHGV-0035016_5	eggNOG-mapper	929556.Solca_2323	NA	NA
UHGV-0035016_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0035016_5	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0035016_6	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0035016_6	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0035016_6	UniRef90	UniRef90_A0A7J0A8P0	HTH-type transcriptional regulator SinR	NA
UHGV-0035016_6	eggNOG-mapper	1268240.ATFI01000020_gene152	NA	NA
UHGV-0035016_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035016_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0035016_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0035016_7	eggNOG-mapper	1433126.BN938_1801	NA	NA
UHGV-0035016_7	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0035016_11	UniRef90	UniRef90_UPI001EFF9E51	phage antirepressor KilAC domain-containing protein	NA
UHGV-0035016_11	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-0035016_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0035016_11	Structural annotation	COG3561	NA	NA
UHGV-0035016_17	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0035016_18	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0035016_18	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0035016_18	UniRef90	UniRef90_A0A7C4P4A2	DNA ligase	NA
UHGV-0035016_18	eggNOG-mapper	1123248.KB893386_gene1852	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0035016_18	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-0035016_18	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0035016_18	Structural annotation	PF01653, PF03120, MF_01588, NF005932, COG0272	NA	NA
UHGV-0035016_20	Structural annotation	PF21441, MF_01911, TIGR02337, COG3432	NA	NA
UHGV-0035016_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0035016_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0035016_21	UniRef90	UniRef90_A0A095Z6L5	AAA_31 domain-containing protein	NA
UHGV-0035016_21	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0035016_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0035016_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0035016_21	Structural annotation	PF13614, MF_00533, NF041283, COG1192	NA	NA
UHGV-0035016_22	Structural annotation	PF07878, COG3905	NA	NA
UHGV-0035016_24	UniRef90	UniRef90_A0A353E5D0	Rep_3 domain-containing protein (Fragment)	NA
UHGV-0035016_24	eggNOG-mapper	1095752.HMPREF9969_0713	Initiator RepB protein	NA
UHGV-0035016_24	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0035016_24	Structural annotation	PF20964, PF01051, NF038290, COG5527	NA	NA
UHGV-0035016_27	Structural annotation	PF17457	NA	NA
UHGV-0035016_28	Structural annotation	COG3655	NA	NA
UHGV-0035016_30	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035016_30	UniRef90	UniRef90_A0A355U3Z6	NA	NA
UHGV-0035016_30	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0035016_30	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0035016_30	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0035016_30	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-0035016_32	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-0035016_32	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-0035016_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0035016_32	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-0035016_33	PHROG	phrog_35807	NA	unknown function
UHGV-0035016_33	eggNOG-mapper	357276.EL88_12625	RNA polymerase activity	NA
UHGV-0035016_33	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0035016_33	Structural annotation	PF14902	NA	NA
UHGV-0035016_35	PHROG	phrog_874	NA	unknown function
UHGV-0035016_35	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0035016_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0035016_38	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0035016_38	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0035016_38	UniRef90	UniRef90_A0A2E2XYC7	Beta sliding clamp	NA
UHGV-0035016_38	eggNOG-mapper	693979.Bache_1888	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0035016_38	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0035016_38	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0035016_38	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0035016_38	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0035016_38	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0035016_40	Structural annotation	PF08863	NA	NA
UHGV-0035016_42	Structural annotation	COG2157	NA	NA
UHGV-0035016_46	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-0035016_46	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0035016_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0035016_48	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0035016_48	UniRef90	UniRef90_A0A2X2SZL0	Methyltransferase	NA
UHGV-0035016_48	eggNOG-mapper	1414739.W6ASX7_9CAUD	helicase activity	NA
UHGV-0035016_48	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0035016_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0035016_48	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0035016_49	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0035016_49	UniRef90	UniRef90_A0A096B9T1	Conjugal transfer protein	NA
UHGV-0035016_49	eggNOG-mapper	1236504.HMPREF2132_01885	DNA restriction-modification system	NA
UHGV-0035016_49	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0035016_49	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0035016_51	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0035016_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0035016_51	UniRef90	UniRef90_A0A843HUG4	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0035016_51	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0035016_51	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0035016_51	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0035016_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0035016_51	Structural annotation	PF01507, MF_00064, TIGR02039, COG0175	NA	NA
UHGV-0035016_53	UniRef90	UniRef90_UPI001C2BD57F	phage holin family protein	NA
UHGV-0035016_53	eggNOG-mapper	457424.BFAG_02443	NA	NA
UHGV-0035016_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0035016_53	Structural annotation	TIGR01593	NA	NA
UHGV-0035016_54	Structural annotation	PF20765	NA	NA
UHGV-0035016_56	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0035016_56	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-0035016_56	UniRef90	UniRef90_A0A2L2WS53	PhageMin_Tail domain-containing protein	NA
UHGV-0035016_56	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-0035016_56	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035016_56	COG	COG5283	Phage-related tail protein	NA
UHGV-0035016_56	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0035016_57	UniRef90	UniRef90_A0A2L2WND9	Primase C terminal 2	NA
UHGV-0035016_57	eggNOG-mapper	1236504.HMPREF2132_01765	Primase C terminal 2 (PriCT-2)	NA
UHGV-0035016_57	PADLOC	drt-cluster64	DRT	DRT
UHGV-0035016_57	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-0035016_57	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0035016_57	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0035016_57	Structural annotation	PF08800, NF040562	NA	NA
UHGV-0035016_58	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-0035016_58	PHROG	phrog_1815	guanylate kinase	other
UHGV-0035016_58	UniRef90	UniRef90_A0A354WXC5	Guanylate kinase	NA
UHGV-0035016_58	eggNOG-mapper	1433126.BN938_1741	Guanylate kinase	NA
UHGV-0035016_58	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-0035016_58	COG	COG0194	Guanylate kinase	NA
UHGV-0035016_58	Structural annotation	PF00625, MF_00328, TIGR03263, COG0194	NA	NA
UHGV-0035016_59	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0035016_59	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0035016_59	UniRef90	UniRef90_A0A345BP42	Thymidylate synthase complementing protein	NA
UHGV-0035016_59	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-0035016_59	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0035016_59	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0035016_59	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0035016_60	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0035016_60	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0035016_63	Structural annotation	PF11550, COG5437	NA	NA
UHGV-0035016_64	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0035016_64	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0035016_64	UniRef90	UniRef90_A0A2L2WN07	Signal peptide peptidase SppA, 36K type	NA
UHGV-0035016_64	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-0035016_64	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0035016_64	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0035016_65	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035016_66	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-0035016_67	KOfam	K11921	cynR; LysR family transcriptional regulator, cyn operon transcriptional activator	NA
UHGV-0035016_67	PHROG	phrog_3736	NA	unknown function
UHGV-0035016_67	UniRef90	UniRef90_A0A353E8E6	HTH lysR-type domain-containing protein	NA
UHGV-0035016_67	eggNOG-mapper	1317122.ATO12_13660	LysR substrate binding domain	NA
UHGV-0035016_67	Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	HTH_1
UHGV-0035016_67	Pfam	PF03466	LysR substrate binding domain	LysR_substrate
UHGV-0035016_67	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA
UHGV-0035016_67	Structural annotation	PF03466, PF00126, MF_01233, NF040786, COG0583	NA	NA
UHGV-0035016_70	Structural annotation	PF10628	NA	NA
UHGV-0035016_74	PHROG	phrog_874	NA	unknown function
UHGV-0035016_74	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0035016_74	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0035016_77	PHROG	phrog_8684	NA	unknown function
UHGV-0035016_77	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-0035016_77	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0035016_77	Pfam	PF09643	YopX protein	YopX
UHGV-0035016_77	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0035016_83	Structural annotation	COG5475	NA	NA
UHGV-0035016_86	UniRef90	UniRef90_A0A6I1S5I8	GNAT family N-acetyltransferase	NA
UHGV-0035016_86	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0035016_86	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0035016_87	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0035016_87	UniRef90	UniRef90_R6U473	Gp142	NA
UHGV-0035016_87	eggNOG-mapper	1327935.A0A060AD14_9CAUD	NA	NA
UHGV-0035016_87	Structural annotation	COG1704	NA	NA
UHGV-0035016_88	PHROG	phrog_2087	NA	unknown function
UHGV-0035016_88	eggNOG-mapper	1410653.JHVC01000005_gene2495	NA	NA
UHGV-0035016_89	Structural annotation	PF13619	NA	NA
UHGV-0035016_90	eggNOG-mapper	1235803.C825_03414	NA	NA
UHGV-0035016_90	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0035016_91	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0035016_91	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0035016_91	UniRef90	UniRef90_A0A255TPS1	Methyltransferase	NA
UHGV-0035016_91	eggNOG-mapper	483215.BACFIN_05771	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0035016_91	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0035016_91	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0035016_91	COG	COG0863	DNA modification methylase	NA
UHGV-0035016_91	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0035016_92	Pfam	PF20459	NA	DUF6712
UHGV-0035016_92	Structural annotation	PF20459	NA	NA
UHGV-0035016_97	PHROG	phrog_17422	NA	unknown function
UHGV-0035016_97	eggNOG-mapper	1392486.JIAF01000004_gene815	NA	NA