UHGV-0035141

Genome information

Genome length 42,656 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9578

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035141
vOTU ID	vOTU-044425
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_21_CHE1011TZ__NODE_910_length_42733_cov_50.516926
BioSample	SAMEA4969132
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9578
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.72
Jumbo phage	No

Genome content
Genome length	42,656 bps
GC content	68.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.27%
Average CDS length	580.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035141_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0035141_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0035141_1	UniRef90	UniRef90_A0A3G9KAD9	Site-specific DNA recombinase	NA
UHGV-0035141_1	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0035141_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0035141_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0035141_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0035141_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0035141_2	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-0035141_2	eggNOG-mapper	947980.E9LUL0_9CAUD	NA	NA
UHGV-0035141_3	UniRef90	UniRef90_G1WJ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0035141_3	eggNOG-mapper	742742.HMPREF9452_01329	Helix-turn-helix	NA
UHGV-0035141_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0035141_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0035141_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035141_4	UniRef90	UniRef90_A0A0R1UKZ8	HTH cro/C1-type domain-containing protein	NA
UHGV-0035141_4	eggNOG-mapper	1235797.C816_01410	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035141_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035141_4	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0035141_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0035141_11	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0035141_11	UniRef90	UniRef90_UPI0009323E96	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0035141_11	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-0035141_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0035141_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0035141_11	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0035141_12	PHROG	phrog_34396	NA	unknown function
UHGV-0035141_12	UniRef90	UniRef90_UPI0009355547	NA	NA
UHGV-0035141_12	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-0035141_12	Pfam	PF07083	NA	DUF1351
UHGV-0035141_12	Structural annotation	PF07083	NA	NA
UHGV-0035141_13	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0035141_13	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-0035141_13	eggNOG-mapper	1504822.CCNO01000013_gene307	NA	NA
UHGV-0035141_13	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0035141_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0035141_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0035141_14	UniRef90	UniRef90_UPI000E3BD68B	single-stranded DNA-binding protein	NA
UHGV-0035141_14	eggNOG-mapper	936550.HMPREF1492_1410	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0035141_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0035141_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0035141_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0035141_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0035141_14	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0035141_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0035141_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0035141_15	UniRef90	UniRef90_A0A412AQ32	Cytosine-specific methyltransferase	NA
UHGV-0035141_15	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-0035141_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0035141_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0035141_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0035141_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0035141_15	Structural annotation	PF00145, MF_01547, TIGR00675, COG0270	NA	NA
UHGV-0035141_19	Structural annotation	PF06530	NA	NA
UHGV-0035141_20	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0035141_20	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0035141_20	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0035141_22	PHROG	phrog_21525	NA	unknown function
UHGV-0035141_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0035141_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0035141_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0035141_24	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0035141_25	Structural annotation	PF01649, MF_00500, TIGR00029, COG0268	NA	NA
UHGV-0035141_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0035141_27	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0035141_27	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0035141_29	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0035141_31	PHROG	phrog_3392	NA	unknown function
UHGV-0035141_31	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0035141_33	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0035141_33	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-0035141_33	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0035141_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0035141_34	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0035141_34	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0035141_34	UniRef90	UniRef90_A0A3G9JWL1	IstB_IS21 domain-containing protein	NA
UHGV-0035141_34	eggNOG-mapper	479437.Elen_1499	IstB-like ATP binding protein	NA
UHGV-0035141_34	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0035141_34	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0035141_34	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0035141_41	UniRef90	UniRef90_A0A1E8VUD2	HTH cro/C1-type domain-containing protein	NA
UHGV-0035141_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0035141_42	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0035141_42	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0035141_42	UniRef90	UniRef90_UPI001BB21D57	recombinase family protein	NA
UHGV-0035141_42	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0035141_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0035141_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0035141_42	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0035141_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0035141_43	UniRef90	UniRef90_UPI001106681D	phage terminase large subunit	NA
UHGV-0035141_43	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0035141_43	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0035141_43	COG	COG5410	NA	NA
UHGV-0035141_43	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0035141_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0035141_44	UniRef90	UniRef90_UPI001C94E255	phage portal protein	NA
UHGV-0035141_44	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0035141_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0035141_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0035141_45	UniRef90	UniRef90_UPI001C9809E0	NA	NA
UHGV-0035141_45	Pfam	PF14265	NA	DUF4355
UHGV-0035141_45	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0035141_46	PHROG	phrog_247	major head protein	head and packaging
UHGV-0035141_46	UniRef90	UniRef90_UPI001106BB9B	major capsid protein	NA
UHGV-0035141_46	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0035141_46	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0035141_47	UniRef90	UniRef90_UPI001C9486FC	phage head-tail connector protein	NA
UHGV-0035141_47	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0035141_47	Structural annotation	TIGR01560	NA	NA
UHGV-0035141_49	UniRef90	UniRef90_UPI001C963648	HK97 gp10 family phage protein	NA
UHGV-0035141_49	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0035141_50	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0035141_51	PHROG	phrog_158	major tail protein	tail
UHGV-0035141_51	UniRef90	UniRef90_UPI001106E87B	phage tail protein	NA
UHGV-0035141_51	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0035141_51	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0035141_51	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0035141_52	UniRef90	UniRef90_UPI0009316611	NA	NA
UHGV-0035141_52	Pfam	PF16478	NA	DUF5055
UHGV-0035141_52	Structural annotation	PF16478	NA	NA
UHGV-0035141_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0035141_54	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0035141_54	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0035141_55	PHROG	phrog_1194	NA	unknown function
UHGV-0035141_55	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0035141_55	Pfam	PF20458	NA	DUF6711
UHGV-0035141_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0035141_56	PHROG	phrog_6616	tail protein	tail
UHGV-0035141_56	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0035141_56	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0035141_56	COG	COG4926	Phage-related protein	NA
UHGV-0035141_56	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0035141_57	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0035141_60	PHROG	phrog_21718	NA	unknown function
UHGV-0035141_60	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0035141_62	PHROG	phrog_16490	NA	unknown function
UHGV-0035141_62	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0035141_63	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0035141_65	PHROG	phrog_297	holin	lysis
UHGV-0035141_65	UniRef90	UniRef90_UPI0009F738EC	phage holin	NA
UHGV-0035141_65	eggNOG-mapper	445972.ANACOL_03382	COG COG5546 Small integral membrane protein	NA
UHGV-0035141_65	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0035141_65	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0035141_65	COG	COG5546	NA	NA
UHGV-0035141_65	Structural annotation	COG5546	NA	NA
UHGV-0035141_66	PHROG	phrog_7854	endolysin	lysis
UHGV-0035141_66	UniRef90	UniRef90_UPI0013A63178	NlpC/P60 family protein	NA
UHGV-0035141_66	eggNOG-mapper	1235798.C817_01663	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0035141_66	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0035141_66	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0035141_66	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035141_66	Structural annotation	PF19127, PF05382, MF_00727, TIGR04035, NF033742, COG5263	NA	NA