UHGV-0035157

Genome information

Genome length 33,802 bps

CDS count 67

Completeness 89.21% (medium-quality)

geNomad score 0.9639

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035157
vOTU ID	vOTU-028577
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_7_THA1072JZ__NODE_1988_length_33802_cov_6.067161
BioSample	SAMEA4969195
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9639
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.5
Jumbo phage	No

Genome content
Genome length	33,802 bps
GC content	27.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.53%
Average CDS length	476.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035157_1	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0035157_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0035157_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0035157_2	UniRef90	UniRef90_R7ITQ6	Bro-N domain-containing protein	NA
UHGV-0035157_2	eggNOG-mapper	469617.FUAG_02551	Phage antirepressor protein KilAC domain	NA
UHGV-0035157_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0035157_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0035157_2	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0035157_3	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0035157_8	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035157_8	UniRef90	UniRef90_R7IWH8	HNHc domain-containing protein	NA
UHGV-0035157_8	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0035157_8	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0035157_9	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0035157_9	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0035157_9	UniRef90	UniRef90_UPI0011E8B9D5	DnaD domain protein	NA
UHGV-0035157_9	eggNOG-mapper	218284.CCDN010000001_gene839	Helix-turn-helix domain	NA
UHGV-0035157_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0035157_9	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0035157_9	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0035157_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0035157_9	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0035157_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0035157_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0035157_10	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0035157_10	eggNOG-mapper	273068.TTE2774	Participates in initiation and elongation during chromosome replication	NA
UHGV-0035157_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0035157_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0035157_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0035157_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0035157_12	UniRef90	UniRef90_A0A1Q6M1X1	HTH_11 domain-containing protein	NA
UHGV-0035157_12	Pfam	PF08279	HTH domain	HTH_11
UHGV-0035157_12	Structural annotation	PF21715, TIGR00122	NA	NA
UHGV-0035157_14	eggNOG-mapper	397291.C804_01606	NA	NA
UHGV-0035157_16	eggNOG-mapper	411154.GFO_2482	YopX protein	NA
UHGV-0035157_17	Structural annotation	PF18337, MF_00754, TIGR00739, COG1862	NA	NA
UHGV-0035157_18	PHROG	phrog_2776	NA	unknown function
UHGV-0035157_18	UniRef90	UniRef90_UPI0007BACB01	MmcB family DNA repair protein	NA
UHGV-0035157_18	eggNOG-mapper	1423775.BAMN01000002_gene1875	NA	NA
UHGV-0035157_18	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0035157_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0035157_22	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0035157_22	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0035157_22	Pfam	PF14359	NA	DUF4406
UHGV-0035157_22	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0035157_29	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0035157_29	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-0035157_29	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-0035157_29	Structural annotation	TIGR01689	NA	NA
UHGV-0035157_31	PHROG	phrog_548	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0035157_31	UniRef90	UniRef90_A0A3T0IDB5	RNA_ligase domain-containing protein	NA
UHGV-0035157_31	eggNOG-mapper	221915.Q6Y7U5_BPPGK	RNA ligase	NA
UHGV-0035157_31	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0035157_31	Structural annotation	PF09414, MF_04150, TIGR02306, COG1423	NA	NA
UHGV-0035157_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0035157_33	Pfam	PF07374	NA	DUF1492
UHGV-0035157_33	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0035157_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035157_36	UniRef90	UniRef90_A0A1I2DVJ4	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035157_36	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0035157_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035157_36	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0035157_38	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0035157_38	UniRef90	UniRef90_A0A1I3QJG2	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0035157_38	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0035157_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0035157_38	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0035157_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0035157_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0035157_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035157_39	UniRef90	UniRef90_A0A1C5VGI7	Phage terminase-like protein, large subunit	NA
UHGV-0035157_39	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0035157_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035157_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035157_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035157_39	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035157_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035157_40	UniRef90	UniRef90_UPI001B8210D7	phage portal protein	NA
UHGV-0035157_40	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0035157_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035157_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0035157_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035157_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035157_41	PHROG	phrog_16951	NA	unknown function
UHGV-0035157_41	eggNOG-mapper	1410617.JHXH01000012_gene652	NA	NA
UHGV-0035157_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0035157_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035157_42	UniRef90	UniRef90_A0A174F0V2	NA	NA
UHGV-0035157_42	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0035157_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035157_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035157_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035157_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035157_44	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0035157_44	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0035157_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0035157_44	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0035157_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0035157_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0035157_46	UniRef90	UniRef90_UPI00040399DB	HK97 gp10 family phage protein	NA
UHGV-0035157_46	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-0035157_47	eggNOG-mapper	1035184.HMPREF1042_1333	NA	NA
UHGV-0035157_47	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0035157_48	PHROG	phrog_88	major tail protein	tail
UHGV-0035157_48	UniRef90	UniRef90_UPI00102F83A6	phage tail protein	NA
UHGV-0035157_48	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0035157_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0035157_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0035157_49	PHROG	phrog_709	NA	unknown function
UHGV-0035157_49	Structural annotation	PF11836	NA	NA
UHGV-0035157_51	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0035157_51	UniRef90	UniRef90_A0A173WDC3	Phage-related minor tail protein	NA
UHGV-0035157_51	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0035157_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0035157_52	PHROG	phrog_5218	NA	unknown function
UHGV-0035157_52	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0035157_52	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0035157_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035157_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0035157_52	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0035157_52	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035157_54	PHROG	phrog_13564	minor tail protein	tail
UHGV-0035157_54	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0035157_54	eggNOG-mapper	1278311.AUAL01000001_gene19	NA	NA
UHGV-0035157_54	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0035157_54	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0035157_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035157_64	PHROG	phrog_1493	endolysin	lysis
UHGV-0035157_64	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0035157_64	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0035157_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0035157_64	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0035157_64	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0035157_64	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0035157_65	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035157_65	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0035157_66	PHROG	phrog_2329	NA	unknown function
UHGV-0035157_66	UniRef90	UniRef90_A0A8I1VFN4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0035157_66	eggNOG-mapper	1321779.HMPREF1984_00114	NA	NA