UHGV-0035202

Genome information

Genome length 35,034 bps

CDS count 56

Completeness 77.79% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035202
vOTU ID	vOTU-018796
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_87
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.88
Jumbo phage	No

Genome content
Genome length	35,034 bps
GC content	55.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.08%
Average CDS length	581.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035202_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035202_2	PHROG	phrog_435	endolysin	lysis
UHGV-0035202_2	UniRef90	UniRef90_UPI001D0E5BDE	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035202_2	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035202_2	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0035202_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0035202_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035202_2	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0035202_3	UniRef90	UniRef90_A0A3E2XY07	Phage holin	NA
UHGV-0035202_3	eggNOG-mapper	1196031.ALEG01000039_gene1307	Bacteriophage holin	NA
UHGV-0035202_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0035202_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0035202_3	COG	COG5546	NA	NA
UHGV-0035202_3	Structural annotation	COG5546	NA	NA
UHGV-0035202_7	PHROG	phrog_20274	NA	unknown function
UHGV-0035202_7	UniRef90	UniRef90_A0A1C6BH15	Predicted membrane protein	NA
UHGV-0035202_7	eggNOG-mapper	1243664.CAVL020000021_gene3234	Putative ABC-transporter type IV	NA
UHGV-0035202_7	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0035202_7	COG	COG4905	NA	NA
UHGV-0035202_7	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0035202_8	UniRef90	UniRef90_A0A1Y4RWY1	NA	NA
UHGV-0035202_8	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0035202_8	Structural annotation	PF14301	NA	NA
UHGV-0035202_9	PHROG	phrog_5302	tail protein	tail
UHGV-0035202_9	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0035202_9	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-0035202_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0035202_9	Structural annotation	PF03781, TIGR03529, COG1262	NA	NA
UHGV-0035202_11	PHROG	phrog_521	tail protein	tail
UHGV-0035202_11	UniRef90	UniRef90_A0A3E2XYI7	NA	NA
UHGV-0035202_11	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0035202_11	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0035202_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0035202_11	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0035202_12	PHROG	phrog_1608	tail protein	tail
UHGV-0035202_12	UniRef90	UniRef90_A0A3E2XXS7	Phage tail protein	NA
UHGV-0035202_12	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0035202_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0035202_12	COG	COG3299	NA	NA
UHGV-0035202_12	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0035202_13	PHROG	phrog_120	baseplate protein	tail
UHGV-0035202_13	UniRef90	UniRef90_A0A3E2XZ30	NA	NA
UHGV-0035202_13	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0035202_13	Pfam	PF10934	NA	DUF2634
UHGV-0035202_13	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0035202_13	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0035202_14	PHROG	phrog_579	NA	unknown function
UHGV-0035202_14	UniRef90	UniRef90_A0A3E2XXZ4	NA	NA
UHGV-0035202_14	eggNOG-mapper	1352230.S6C459_9CAUD	NA	NA
UHGV-0035202_14	Pfam	PF10844	NA	DUF2577
UHGV-0035202_14	Structural annotation	PF10844	NA	NA
UHGV-0035202_15	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0035202_15	PHROG	phrog_400	tail protein	tail
UHGV-0035202_15	UniRef90	UniRef90_A0A417IT88	Peptidase_M23 domain-containing protein	NA
UHGV-0035202_15	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0035202_15	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0035202_15	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0035202_15	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0035202_16	PHROG	phrog_380	endolysin	lysis
UHGV-0035202_16	UniRef90	UniRef90_A0A417HNW8	LysM domain-containing protein	NA
UHGV-0035202_16	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0035202_16	Pfam	PF01476	LysM domain	LysM
UHGV-0035202_16	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0035202_16	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0035202_17	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0035202_17	UniRef90	UniRef90_A0A417BYU2	TMP_3 domain-containing protein	NA
UHGV-0035202_17	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0035202_17	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0035202_18	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0035202_18	UniRef90	UniRef90_A0A3E2XZG5	TMP_3 domain-containing protein	NA
UHGV-0035202_18	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0035202_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0035202_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0035202_18	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0035202_19	UniRef90	UniRef90_A0A3E2XXT8	Copper amine oxidase N-terminal domain-containing protein	NA
UHGV-0035202_19	eggNOG-mapper	203119.Cthe_0779	CAP-associated N-terminal	NA
UHGV-0035202_19	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0035202_19	COG	COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	NA
UHGV-0035202_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0035202_20	UniRef90	UniRef90_A0A3E2XXX4	Phage portal protein	NA
UHGV-0035202_20	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0035202_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0035202_20	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0035202_21	PHROG	phrog_365	tail protein	tail
UHGV-0035202_21	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0035202_21	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0035202_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0035202_21	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0035202_22	PHROG	phrog_279	tail sheath	tail
UHGV-0035202_22	UniRef90	UniRef90_A0A3E2XXT6	Phage tail protein	NA
UHGV-0035202_22	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0035202_22	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0035202_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0035202_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0035202_22	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0035202_23	PHROG	phrog_966	NA	unknown function
UHGV-0035202_23	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0035202_24	PHROG	phrog_525	NA	unknown function
UHGV-0035202_24	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0035202_24	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0035202_24	Pfam	PF20765	NA	DUF6838
UHGV-0035202_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0035202_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0035202_25	UniRef90	UniRef90_A0A3E2XZ40	HK97 gp10 family phage protein	NA
UHGV-0035202_25	eggNOG-mapper	411902.CLOBOL_03472	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0035202_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0035202_25	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0035202_26	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0035202_26	UniRef90	UniRef90_UPI001B11203B	NA	NA
UHGV-0035202_26	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0035202_26	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0035202_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0035202_27	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-0035202_27	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0035202_27	Structural annotation	PF05135	NA	NA
UHGV-0035202_28	UniRef90	UniRef90_A0A1M6EXN4	Rho termination factor, N-terminal domain	NA
UHGV-0035202_28	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0035202_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-0035202_29	UniRef90	UniRef90_A0A3E2XZN2	Phage capsid protein	NA
UHGV-0035202_29	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0035202_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0035202_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0035202_30	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0035202_31	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0035202_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0035202_32	UniRef90	UniRef90_A0A3E2XXY5	Phage_Mu_F domain-containing protein	NA
UHGV-0035202_32	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0035202_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0035202_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0035202_32	COG	COG2369	NA	NA
UHGV-0035202_32	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0035202_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0035202_33	UniRef90	UniRef90_A0A417BZ11	Phage portal protein	NA
UHGV-0035202_33	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0035202_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0035202_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0035202_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0035202_34	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0035202_34	UniRef90	UniRef90_UPI001C11FB42	phage terminase large subunit	NA
UHGV-0035202_34	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0035202_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0035202_34	COG	COG5410	NA	NA
UHGV-0035202_35	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0035202_35	UniRef90	UniRef90_A0A845MZ56	Phage terminase large subunit	NA
UHGV-0035202_35	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0035202_35	COG	COG5410	NA	NA
UHGV-0035202_35	Structural annotation	PF03237, PF17289, MF_04147, NF033889, COG5410	NA	NA
UHGV-0035202_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0035202_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0035202_36	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-0035202_36	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-0035202_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0035202_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0035202_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0035202_37	PHROG	phrog_6988	NA	unknown function
UHGV-0035202_37	UniRef90	UniRef90_A0A417HNR1	NA	NA
UHGV-0035202_37	eggNOG-mapper	635013.TherJR_2008	NA	NA
UHGV-0035202_37	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0035202_38	eggNOG-mapper	1235802.C823_00136	NA	NA
UHGV-0035202_39	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0035202_39	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0035202_41	PHROG	phrog_3409	NA	unknown function
UHGV-0035202_41	UniRef90	UniRef90_UPI001899EFAC	NA	NA
UHGV-0035202_41	eggNOG-mapper	977801.F0PIH7_9VIRU	NA	NA
UHGV-0035202_41	Pfam	PF17400	NA	DUF5406
UHGV-0035202_41	Structural annotation	PF17400	NA	NA
UHGV-0035202_42	PHROG	phrog_33866	NA	unknown function
UHGV-0035202_46	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0035202_46	UniRef90	UniRef90_A0A396QBH7	Nucleotide pyrophosphohydrolase	NA
UHGV-0035202_46	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0035202_46	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0035202_46	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0035202_46	Structural annotation	PF03819, MF_01019, NF008986, COG1694	NA	NA
UHGV-0035202_47	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035202_47	UniRef90	UniRef90_A0A3E2XXV5	NA	NA
UHGV-0035202_47	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0035202_47	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0035202_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0035202_48	PHROG	phrog_1029	NA	unknown function
UHGV-0035202_48	eggNOG-mapper	562743.JH976434_gene1043	NA	NA
UHGV-0035202_48	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0035202_49	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0035202_49	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0035202_49	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0035202_51	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0035202_51	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0035202_51	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0035202_51	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0035202_51	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0035202_51	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0035202_51	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0035202_52	PHROG	phrog_862	NA	unknown function
UHGV-0035202_52	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0035202_52	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0035202_53	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0035202_53	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035202_53	UniRef90	UniRef90_A0A3E2XY48	AAA_23 domain-containing protein	NA
UHGV-0035202_53	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0035202_53	Pfam	PF13476	AAA domain	AAA_23
UHGV-0035202_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0035202_53	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0035202_56	Structural annotation	PF11112	NA	NA