UHGV-0035319

Genome information

Genome length 33,122 bps

CDS count 48

Completeness 79.00% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035319
vOTU ID	vOTU-033619
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_12_1518__NODE_1814_length_33122_cov_30.837494
BioSample	SAMEA4765810
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.32
Jumbo phage	No

Genome content
Genome length	33,122 bps
GC content	37.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.90%
Average CDS length	639.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035319_1	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0035319_1	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0035319_1	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0035319_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0035319_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0035319_4	UniRef90	UniRef90_UPI00189992A5	single-stranded DNA-binding protein	NA
UHGV-0035319_4	eggNOG-mapper	1278304.JAFR01000009_gene1227	single-stranded DNA binding	NA
UHGV-0035319_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0035319_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0035319_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0035319_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0035319_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0035319_7	Structural annotation	TIGR01636	NA	NA
UHGV-0035319_8	PHROG	phrog_3675	NA	unknown function
UHGV-0035319_8	UniRef90	UniRef90_A0A3E2UCU7	Dihydrolipoyl dehydrogenase	NA
UHGV-0035319_8	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0035319_8	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0035319_8	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0035319_9	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0035319_9	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0035319_9	UniRef90	UniRef90_UPI0013DF8249	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0035319_9	eggNOG-mapper	706434.HMPREF9429_00535	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0035319_9	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0035319_9	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0035319_10	PHROG	phrog_1281	NA	unknown function
UHGV-0035319_10	UniRef90	UniRef90_UPI00189B7989	NA	NA
UHGV-0035319_10	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-0035319_10	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0035319_10	COG	COG3600	NA	NA
UHGV-0035319_10	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0035319_14	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0035319_14	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0035319_14	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0035319_14	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0035319_16	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-0035319_16	Structural annotation	PF18358, NF037951	NA	NA
UHGV-0035319_19	Structural annotation	PF08962	NA	NA
UHGV-0035319_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0035319_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035319_21	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0035319_21	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0035319_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035319_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035319_23	UniRef90	UniRef90_W0FKV6	Putative phage terminase, large subunit	NA
UHGV-0035319_23	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0035319_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035319_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035319_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035319_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035319_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035319_24	UniRef90	UniRef90_UPI0001668EB1	phage portal protein	NA
UHGV-0035319_24	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0035319_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035319_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035319_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035319_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0035319_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0035319_25	UniRef90	UniRef90_UPI001E29EFE6	Clp protease ClpP	NA
UHGV-0035319_25	eggNOG-mapper	1403313.AXBR01000002_gene4326	Belongs to the peptidase S14 family	NA
UHGV-0035319_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0035319_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0035319_25	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0035319_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035319_26	UniRef90	UniRef90_A0A0F3FRY7	Major capsid protein	NA
UHGV-0035319_26	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-0035319_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035319_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035319_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035319_27	PHROG	phrog_749	NA	unknown function
UHGV-0035319_27	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0035319_27	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0035319_31	PHROG	phrog_88	major tail protein	tail
UHGV-0035319_31	UniRef90	UniRef90_A6M958	Putative major capsid protein	NA
UHGV-0035319_31	eggNOG-mapper	447909.A6M958_9VIRU	NA	NA
UHGV-0035319_31	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0035319_31	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0035319_31	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0035319_33	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0035319_33	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0035319_33	UniRef90	UniRef90_A0A174LYQ1	Phage-related minor tail protein	NA
UHGV-0035319_33	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0035319_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035319_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0035319_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0035319_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035319_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0035319_34	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0035319_34	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0035319_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0035319_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0035319_35	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0035319_35	PHROG	phrog_5555	tail protein	tail
UHGV-0035319_35	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0035319_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0035319_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0035319_35	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0035319_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0035319_35	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0035319_35	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926, COG3506	NA	NA
UHGV-0035319_36	PHROG	phrog_372	tail protein	tail
UHGV-0035319_36	UniRef90	UniRef90_A0A3N0HXV0	Pilus assembly protein	NA
UHGV-0035319_36	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0035319_36	Pfam	PF05895	NA	DUF859
UHGV-0035319_36	COG	COG4675	Phage tail collar domain	NA
UHGV-0035319_36	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0035319_37	Structural annotation	PF10618	NA	NA
UHGV-0035319_40	KOfam	K07273	acm; lysozyme	NA
UHGV-0035319_40	PHROG	phrog_291	endolysin	lysis
UHGV-0035319_40	UniRef90	UniRef90_UPI000414A751	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0035319_40	eggNOG-mapper	1123263.AUKY01000015_gene1625	lyzozyme M1	NA
UHGV-0035319_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0035319_40	Pfam	PF01476	LysM domain	LysM
UHGV-0035319_40	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0035319_40	COG	COG1388	LysM repeat	NA
UHGV-0035319_40	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0035319_42	PHROG	phrog_881	holin	lysis
UHGV-0035319_42	UniRef90	UniRef90_O03978	Holin	NA
UHGV-0035319_42	eggNOG-mapper	59241.E7DNC2_BPDP1	Pfam:Phage_holin_Dp1	NA
UHGV-0035319_42	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0035319_42	Structural annotation	PF16938	NA	NA
UHGV-0035319_43	eggNOG-mapper	1120971.AUCA01000043_gene1174	sigma factor activity	NA
UHGV-0035319_43	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0035319_43	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0035319_43	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0035319_45	PHROG	phrog_22984	NA	unknown function
UHGV-0035319_46	PHROG	phrog_16490	NA	unknown function
UHGV-0035319_46	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0035319_47	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0035319_48	Pfam	PF02915	Rubrerythrin	Rubrerythrin