UHGV-0035409

Genome information

Genome length 42,745 bps

CDS count 69

Completeness 53.44% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035409
vOTU ID	vOTU-035562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1387
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.82
Jumbo phage	No

Genome content
Genome length	42,745 bps
GC content	42.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.96%
Average CDS length	584.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035409_1	KOfam	K14059	int; integrase	NA
UHGV-0035409_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0035409_1	UniRef90	UniRef90_A0A3R6EA66	Site-specific integrase	NA
UHGV-0035409_1	eggNOG-mapper	907931.AEIZ01000015_gene1123	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0035409_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035409_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035409_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0035409_2	UniRef90	UniRef90_A0A3R6BX48	PIN domain-containing protein	NA
UHGV-0035409_2	eggNOG-mapper	323261.Noc_0062	PFAM PilT protein domain protein	NA
UHGV-0035409_2	Pfam	PF01850	PIN domain	PIN
UHGV-0035409_2	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-0035409_3	UniRef90	UniRef90_A0A414KPT3	NA	NA
UHGV-0035409_3	eggNOG-mapper	1235799.C818_01523	NA	NA
UHGV-0035409_3	Pfam	PF14213	NA	DUF4325
UHGV-0035409_3	Structural annotation	PF14213	NA	NA
UHGV-0035409_4	PHROG	phrog_3364	NA	unknown function
UHGV-0035409_4	UniRef90	UniRef90_A0A1L6R8X8	ATP-binding region, ATPase-like	NA
UHGV-0035409_4	eggNOG-mapper	985762.SAGN_00800	Histidine kinase-like ATPases	NA
UHGV-0035409_4	COG	COG2172	Anti-sigma regulatory factor (Ser/Thr protein kinase)	NA
UHGV-0035409_4	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-0035409_6	PHROG	phrog_750	NA	unknown function
UHGV-0035409_6	eggNOG-mapper	1231377.C426_1696	NA	NA
UHGV-0035409_6	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0035409_7	PHROG	phrog_888	NA	unknown function
UHGV-0035409_7	UniRef90	UniRef90_A0A139QKL8	SHOCT domain-containing protein	NA
UHGV-0035409_7	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0035409_10	PHROG	phrog_87	metallo-protease	other
UHGV-0035409_10	UniRef90	UniRef90_UPI001D176653	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0035409_10	eggNOG-mapper	1127131.WEISSC39_10420	Zn peptidase	NA
UHGV-0035409_10	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0035409_10	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0035409_11	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0035409_11	UniRef90	UniRef90_A0A482PRQ0	XRE family transcriptional regulator	NA
UHGV-0035409_11	eggNOG-mapper	46256.BBIK01000005_gene1058	PFAM helix-turn-helix domain protein	NA
UHGV-0035409_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035409_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0035409_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0035409_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035409_12	UniRef90	UniRef90_A0A139QKZ0	HTH cro/C1-type domain-containing protein	NA
UHGV-0035409_12	eggNOG-mapper	985762.SAGN_11387	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035409_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035409_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0035409_13	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0035409_13	UniRef90	UniRef90_A0A3R6CEB5	Bro-N domain-containing protein	NA
UHGV-0035409_13	eggNOG-mapper	927691.AEMI01000016_gene1046	Phage regulatory protein	NA
UHGV-0035409_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0035409_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0035409_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0035409_13	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0035409_15	eggNOG-mapper	1154757.Q5C_04680	NA	NA
UHGV-0035409_22	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0035409_22	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0035409_22	UniRef90	UniRef90_A0A139QKJ4	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0035409_22	eggNOG-mapper	1127131.WEISSC39_07960	RecT protein	NA
UHGV-0035409_22	Pfam	PF03837	RecT family	RecT
UHGV-0035409_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0035409_23	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035409_23	UniRef90	UniRef90_A0A3R6F8Y5	NA	NA
UHGV-0035409_23	eggNOG-mapper	1127131.WEISSC39_07955	NA	NA
UHGV-0035409_23	Pfam	PF12684	NA	DUF3799
UHGV-0035409_23	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0035409_23	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0035409_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0035409_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0035409_24	UniRef90	UniRef90_A0A2S1KRK3	AAA domain-containing protein	NA
UHGV-0035409_24	eggNOG-mapper	1127131.WEISSC39_07950	DNA-dependent DNA replication	NA
UHGV-0035409_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0035409_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0035409_25	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0035409_25	UniRef90	UniRef90_A0A2S1KRJ3	DnaB_2 domain-containing protein	NA
UHGV-0035409_25	eggNOG-mapper	1127131.WEISSC39_07945	NA	NA
UHGV-0035409_25	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0035409_25	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0035409_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0035409_25	Structural annotation	NF040939, COG3611	NA	NA
UHGV-0035409_28	PHROG	phrog_1422	NA	unknown function
UHGV-0035409_28	UniRef90	UniRef90_A0A414KCS1	NA	NA
UHGV-0035409_28	eggNOG-mapper	565664.EFXG_01155	NA	NA
UHGV-0035409_28	Pfam	PF07411	NA	DUF1508
UHGV-0035409_28	COG	COG3422	NA	NA
UHGV-0035409_28	Structural annotation	PF07411, NF041908, COG3422	NA	NA
UHGV-0035409_29	UniRef90	UniRef90_A0A2S1KRH8	Helix-turn-helix domain-containing protein	NA
UHGV-0035409_29	eggNOG-mapper	1347392.CCEZ01000043_gene479	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0035409_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0035409_29	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0035409_32	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0035409_32	UniRef90	UniRef90_A0A5E8F9C5	Possible dTDP-glucose pyrophosphorylase	NA
UHGV-0035409_32	eggNOG-mapper	1127131.WEISSC39_07885	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0035409_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0035409_35	PHROG	phrog_98	NA	unknown function
UHGV-0035409_35	UniRef90	UniRef90_A0A139QL08	YopX domain-containing protein	NA
UHGV-0035409_35	eggNOG-mapper	46256.BBIK01000004_gene676	YopX protein	NA
UHGV-0035409_35	Pfam	PF09643	YopX protein	YopX
UHGV-0035409_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0035409_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0035409_36	PHROG	phrog_419	NA	unknown function
UHGV-0035409_36	UniRef90	UniRef90_A0A162ECN9	NA	NA
UHGV-0035409_36	eggNOG-mapper	268407.PWYN_12400	NA	NA
UHGV-0035409_36	Structural annotation	PF14083	NA	NA
UHGV-0035409_39	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0035409_39	UniRef90	UniRef90_A0A2S1KRG9	Sigma70_r4_2 domain-containing protein	NA
UHGV-0035409_39	eggNOG-mapper	1127131.WEISSC39_07855	Transcriptional regulator, ArpU family	NA
UHGV-0035409_39	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0035409_39	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0035409_39	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0035409_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0035409_42	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0035409_42	UniRef90	UniRef90_A0A3R6GM12	Terminase	NA
UHGV-0035409_42	eggNOG-mapper	46256.BBIK01000005_gene1040	Homeodomain-like domain	NA
UHGV-0035409_42	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0035409_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0035409_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0035409_42	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0035409_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0035409_43	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0035409_43	UniRef90	UniRef90_A0A5E8F9B6	Terminase large subunit	NA
UHGV-0035409_43	eggNOG-mapper	1127131.WEISSC39_07835	Terminase-like family	NA
UHGV-0035409_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0035409_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0035409_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0035409_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0035409_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0035409_44	UniRef90	UniRef90_A0A139QKT3	Portal protein, phage associated	NA
UHGV-0035409_44	eggNOG-mapper	1127131.WEISSC39_07830	Phage portal protein	NA
UHGV-0035409_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0035409_44	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0035409_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0035409_46	UniRef90	UniRef90_A0A5E8F7S0	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0035409_46	eggNOG-mapper	46256.BBIK01000005_gene1036	NA	NA
UHGV-0035409_48	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0035409_48	UniRef90	UniRef90_A0A139QKH9	Phage capsid and scaffold	NA
UHGV-0035409_48	eggNOG-mapper	1127131.WEISSC39_07810	NA	NA
UHGV-0035409_48	Pfam	PF14265	NA	DUF4355
UHGV-0035409_49	PHROG	phrog_909	major head protein	head and packaging
UHGV-0035409_49	UniRef90	UniRef90_R7FKI7	NA	NA
UHGV-0035409_49	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0035409_50	PHROG	phrog_29	major head protein	head and packaging
UHGV-0035409_50	UniRef90	UniRef90_A0A5E8F6F7	NA	NA
UHGV-0035409_50	eggNOG-mapper	1127131.WEISSC39_07800	Phage major capsid protein E	NA
UHGV-0035409_50	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0035409_50	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0035409_51	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0035409_51	UniRef90	UniRef90_A0A139QKK9	LysM domain-containing protein	NA
UHGV-0035409_51	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0035409_51	Pfam	PF01476	LysM domain	LysM
UHGV-0035409_51	COG	COG0228	Ribosomal protein S16	NA
UHGV-0035409_52	eggNOG-mapper	1423724.BAMM01000020_gene1773	NA	NA
UHGV-0035409_53	PHROG	phrog_222	tail protein	tail
UHGV-0035409_53	UniRef90	UniRef90_A0A1L6R939	Phage-related protein	NA
UHGV-0035409_53	eggNOG-mapper	46256.BBIK01000005_gene1029	NA	NA
UHGV-0035409_54	PHROG	phrog_1661	NA	unknown function
UHGV-0035409_54	eggNOG-mapper	330397.A8ATH0_9CAUD	NA	NA
UHGV-0035409_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0035409_55	PHROG	phrog_1232	NA	unknown function
UHGV-0035409_55	UniRef90	UniRef90_A0A139QKF3	NA	NA
UHGV-0035409_55	eggNOG-mapper	46256.BBIK01000005_gene1027	NA	NA
UHGV-0035409_56	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0035409_56	UniRef90	UniRef90_A0A1L6R918	Phage-related protein	NA
UHGV-0035409_56	eggNOG-mapper	46256.BBIK01000005_gene1026	NA	NA
UHGV-0035409_56	Pfam	PF11863	NA	DUF3383
UHGV-0035409_56	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0035409_57	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0035409_57	UniRef90	UniRef90_UPI0016678689	NA	NA
UHGV-0035409_57	eggNOG-mapper	1127131.WEISSC39_07765	NA	NA
UHGV-0035409_57	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0035409_57	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0035409_58	PHROG	phrog_1778	NA	unknown function
UHGV-0035409_58	UniRef90	UniRef90_A0A1L6R8Z6	NA	NA
UHGV-0035409_58	eggNOG-mapper	1230341.MJ3_13659	NA	NA
UHGV-0035409_59	PHROG	phrog_1995	NA	unknown function
UHGV-0035409_60	PHROG	phrog_37622	NA	unknown function
UHGV-0035409_60	UniRef90	UniRef90_UPI0016817087	tape measure protein	NA
UHGV-0035409_60	eggNOG-mapper	1127131.WEISSC39_07750	NA	NA
UHGV-0035409_60	COG	COG5283	Phage-related tail protein	NA
UHGV-0035409_61	PHROG	phrog_1517	endolysin	lysis
UHGV-0035409_61	UniRef90	UniRef90_A0A2S1KRG3	LysM domain-containing protein	NA
UHGV-0035409_61	eggNOG-mapper	46256.BBIK01000005_gene1021	LysM domain	NA
UHGV-0035409_61	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0035409_61	Pfam	PF01476	LysM domain	LysM
UHGV-0035409_61	COG	COG1388	LysM repeat	NA
UHGV-0035409_61	Structural annotation	PF19512, PF01476, TIGR02899, TIGR01633, COG1388, COG4718	NA	NA
UHGV-0035409_62	PHROG	phrog_1264	NA	unknown function
UHGV-0035409_62	eggNOG-mapper	46256.BBIK01000005_gene1020	NA	NA
UHGV-0035409_63	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0035409_63	PHROG	phrog_17955	esterase/lipase	other
UHGV-0035409_63	UniRef90	UniRef90_A0A2S1KRM5	SGNH/GDSL hydrolase family protein	NA
UHGV-0035409_63	eggNOG-mapper	46256.BBIK01000005_gene1019	NA	NA
UHGV-0035409_63	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0035409_64	UniRef90	UniRef90_A0A5B8TRZ6	ABC transporter substrate-binding protein	NA
UHGV-0035409_64	eggNOG-mapper	1127131.WEISSC39_07730	NA	NA
UHGV-0035409_64	Structural annotation	PF18352, MF_00403_A, NF008190, COG5569	NA	NA
UHGV-0035409_65	KOfam	K06903	NA	NA
UHGV-0035409_65	PHROG	phrog_120	baseplate protein	tail
UHGV-0035409_65	UniRef90	UniRef90_A0A139QKF2	GPW_gp25 domain-containing protein	NA
UHGV-0035409_65	eggNOG-mapper	1127131.WEISSC39_07725	NA	NA
UHGV-0035409_65	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0035409_65	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0035409_66	PHROG	phrog_6	baseplate protein	tail
UHGV-0035409_66	UniRef90	UniRef90_A0A2S1KRG4	Baseplate_J domain-containing protein	NA
UHGV-0035409_66	eggNOG-mapper	46256.BBIK01000005_gene1016	homolog of phage Mu protein gp47	NA
UHGV-0035409_66	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0035409_66	COG	COG3299	NA	NA
UHGV-0035409_66	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0035409_67	PHROG	phrog_1160	baseplate protein	tail
UHGV-0035409_67	UniRef90	UniRef90_UPI00117AE5FF	NA	NA
UHGV-0035409_67	eggNOG-mapper	46256.BBIK01000005_gene1015	NA	NA
UHGV-0035409_68	PHROG	phrog_7911	tail protein	tail
UHGV-0035409_68	UniRef90	UniRef90_UPI00189F1D3B	pyocin knob domain-containing protein	NA
UHGV-0035409_68	eggNOG-mapper	46256.BBIK01000005_gene1014	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0035409_68	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0035409_68	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0035409_69	PHROG	phrog_199	holin	lysis
UHGV-0035409_69	UniRef90	UniRef90_M4I685	Putative holin	NA
UHGV-0035409_69	eggNOG-mapper	1408438.JADD01000021_gene429	toxin secretion phage lysis holin	NA
UHGV-0035409_69	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0035409_69	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0035409_69	COG	COG4824	Phage-related holin (Lysis protein)	NA