UHGV-0035462

Genome information

Genome length 62,255 bps

CDS count 61

Completeness 84.03% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035462
vOTU ID	vOTU-018339
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_15_CHE1003TZ__NODE_578_length_62255_cov_51.985316
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.08
Jumbo phage	No

Genome content
Genome length	62,255 bps
GC content	43.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.76%
Average CDS length	918.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035462_4	PHROG	phrog_14770	NA	unknown function
UHGV-0035462_4	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-0035462_4	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0035462_4	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0035462_4	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0035462_4	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0035462_4	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0035462_4	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0035462_6	PHROG	phrog_38431	NA	unknown function
UHGV-0035462_6	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0035462_6	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0035462_8	PHROG	phrog_28898	NA	unknown function
UHGV-0035462_8	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0035462_8	Structural annotation	PF10781	NA	NA
UHGV-0035462_9	PHROG	phrog_31654	NA	unknown function
UHGV-0035462_9	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0035462_10	PHROG	phrog_16490	NA	unknown function
UHGV-0035462_10	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0035462_10	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0035462_11	UniRef90	UniRef90_A0A0T0M7U2	Glycyl-tRNA synthetase subunit alpha	NA
UHGV-0035462_11	eggNOG-mapper	886379.AEWI01000095_gene1548	NA	NA
UHGV-0035462_14	PHROG	phrog_13518	NA	unknown function
UHGV-0035462_14	eggNOG-mapper	880070.Cycma_1221	lipolytic protein G-D-S-L family	NA
UHGV-0035462_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0035462_15	Structural annotation	PF17994	NA	NA
UHGV-0035462_16	Structural annotation	PF17212	NA	NA
UHGV-0035462_18	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0035462_19	PHROG	phrog_22323	NA	unknown function
UHGV-0035462_19	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0035462_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0035462_20	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-0035462_20	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0035462_22	Structural annotation	PF02368	NA	NA
UHGV-0035462_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0035462_25	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0035462_25	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0035462_25	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0035462_25	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035462_26	PHROG	phrog_32516	NA	unknown function
UHGV-0035462_26	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0035462_26	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0035462_28	PHROG	phrog_27246	NA	unknown function
UHGV-0035462_30	PHROG	phrog_20732	NA	unknown function
UHGV-0035462_30	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-0035462_30	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0035462_30	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0035462_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035462_31	PHROG	phrog_822	amidase	lysis
UHGV-0035462_31	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035462_31	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035462_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0035462_31	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0035462_31	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0035462_32	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0035462_33	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-0035462_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0035462_33	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0035462_34	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0035462_34	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-0035462_34	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-0035462_34	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0035462_34	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0035462_34	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0035462_37	Structural annotation	PF18340, NF037951, COG4466	NA	NA
UHGV-0035462_45	Structural annotation	PF20338	NA	NA
UHGV-0035462_46	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035462_46	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-0035462_47	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-0035462_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0035462_48	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0035462_48	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0035462_48	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-0035462_48	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0035462_48	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-0035462_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0035462_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0035462_49	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0035462_49	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0035462_49	Pfam	PF03837	RecT family	RecT
UHGV-0035462_49	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0035462_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0035462_49	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0035462_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0035462_52	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0035462_53	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0035462_53	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035462_53	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0035462_53	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0035462_53	PADLOC	AAA_15	NA	NA
UHGV-0035462_53	Pfam	PF13476	AAA domain	AAA_23
UHGV-0035462_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0035462_53	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0035462_54	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035462_54	UniRef90	UniRef90_A0A2S1PFF5	HNH endonuclease family protein	NA
UHGV-0035462_54	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0035462_54	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0035462_54	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0035462_54	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0035462_54	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0035462_54	Structural annotation	PF04936	NA	NA
UHGV-0035462_56	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0035462_56	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0035462_56	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-0035462_56	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0035462_56	Pfam	PF00692	dUTPase	dUTPase
UHGV-0035462_56	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0035462_56	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0035462_57	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0035462_57	UniRef90	UniRef90_A0A646FRV7	Rha family transcriptional regulator	NA
UHGV-0035462_57	eggNOG-mapper	1347393.HG726022_gene3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0035462_57	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0035462_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0035462_57	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0035462_57	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0035462_58	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035462_58	UniRef90	UniRef90_A0A646FV86	Recombinase	NA
UHGV-0035462_58	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-0035462_58	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0035462_58	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035462_58	Structural annotation	PF05766	NA	NA
UHGV-0035462_59	PHROG	phrog_16858	NA	unknown function
UHGV-0035462_59	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0035462_59	Structural annotation	PF08587	NA	NA
UHGV-0035462_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0035462_60	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-0035462_60	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035462_60	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0035462_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0035462_61	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0035462_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0035462_61	UniRef90	UniRef90_A0A3E5E8Z5	Site-specific integrase	NA
UHGV-0035462_61	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0035462_61	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0035462_61	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0035462_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035462_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0035462_61	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA