UHGV-0035476

Genome information

Genome length 37,950 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9441

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035476
vOTU ID	vOTU-062932
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_59
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9441
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.52
Jumbo phage	No

Genome content
Genome length	37,950 bps
GC content	33.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	93.13%
Average CDS length	475.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035476_1	UniRef90	UniRef90_UPI001F4C0AB2	NA	NA
UHGV-0035476_1	eggNOG-mapper	35841.BT1A1_3216	NA	NA
UHGV-0035476_3	UniRef90	UniRef90_A0A3E3ACM3	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0035476_3	eggNOG-mapper	562970.Btus_0887	mRNA binding	NA
UHGV-0035476_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0035476_4	KOfam	K14059	int; integrase	NA
UHGV-0035476_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0035476_4	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-0035476_4	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0035476_4	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0035476_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0035476_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035476_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035476_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0035476_5	PHROG	phrog_26910	NA	unknown function
UHGV-0035476_5	eggNOG-mapper	536232.CLM_1686	NA	NA
UHGV-0035476_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0035476_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035476_6	UniRef90	UniRef90_G9R0X7	HTH cro/C1-type domain-containing protein	NA
UHGV-0035476_6	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035476_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035476_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0035476_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0035476_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035476_8	UniRef90	UniRef90_A0A3E3ADD0	XRE family transcriptional regulator	NA
UHGV-0035476_8	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035476_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035476_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0035476_8	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0035476_12	PHROG	phrog_9607	NA	unknown function
UHGV-0035476_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0035476_14	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-0035476_14	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0035476_14	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0035476_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0035476_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0035476_14	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0035476_16	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-0035476_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035476_20	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-0035476_20	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0035476_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0035476_20	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0035476_24	PHROG	phrog_3634	NA	unknown function
UHGV-0035476_24	UniRef90	UniRef90_A0A3E3AEX0	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0035476_24	eggNOG-mapper	1232446.BAIE02000002_gene804	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0035476_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0035476_24	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0035476_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0035476_25	PHROG	phrog_216	integrase	integration and excision
UHGV-0035476_25	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-0035476_25	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0035476_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035476_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035476_25	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0035476_27	PHROG	phrog_5051	NA	unknown function
UHGV-0035476_31	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0035476_33	Structural annotation	PF18300, MF_00085, NF003076	NA	NA
UHGV-0035476_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0035476_35	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0035476_35	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-0035476_35	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0035476_36	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035476_36	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0035476_36	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0035476_36	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0035476_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0035476_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0035476_37	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0035476_37	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0035476_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0035476_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0035476_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0035476_39	PHROG	phrog_1828	NA	unknown function
UHGV-0035476_39	eggNOG-mapper	1450694.BTS2_0549	NA	NA
UHGV-0035476_41	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0035476_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035476_42	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-0035476_42	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0035476_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035476_44	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0035476_44	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-0035476_44	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0035476_44	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0035476_44	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0035476_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035476_45	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-0035476_45	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0035476_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035476_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035476_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035476_45	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0035476_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035476_46	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-0035476_46	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0035476_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035476_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0035476_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035476_46	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0035476_47	KOfam	K06904	NA	NA
UHGV-0035476_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0035476_47	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0035476_47	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0035476_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0035476_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0035476_47	COG	COG3740	Phage head maturation protease	NA
UHGV-0035476_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0035476_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035476_48	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-0035476_48	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-0035476_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035476_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035476_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035476_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035476_49	PHROG	phrog_2550	NA	unknown function
UHGV-0035476_49	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0035476_49	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0035476_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0035476_50	PHROG	phrog_19734	NA	unknown function
UHGV-0035476_50	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-0035476_50	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0035476_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0035476_51	PHROG	phrog_78	tail terminator	connector
UHGV-0035476_51	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0035476_51	Structural annotation	PF05657	NA	NA
UHGV-0035476_52	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0035476_52	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0035476_52	Structural annotation	TIGR01725	NA	NA
UHGV-0035476_53	PHROG	phrog_88	major tail protein	tail
UHGV-0035476_53	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0035476_53	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0035476_53	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0035476_54	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0035476_56	PHROG	phrog_23464	NA	unknown function
UHGV-0035476_56	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0035476_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0035476_56	Structural annotation	PF20155	NA	NA
UHGV-0035476_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0035476_57	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0035476_57	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0035476_57	COG	COG4722	Phage-related protein YomH	NA
UHGV-0035476_57	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0035476_58	PHROG	phrog_13289	tail protein	tail
UHGV-0035476_58	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0035476_58	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0035476_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0035476_58	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0035476_58	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0035476_58	COG	COG4926	Phage-related protein	NA
UHGV-0035476_58	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0035476_59	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0035476_60	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0035476_60	PHROG	phrog_11157	NA	unknown function
UHGV-0035476_60	UniRef90	UniRef90_A0A1Y4N8R1	Big_13 domain-containing protein	NA
UHGV-0035476_60	eggNOG-mapper	1232446.BAIE02000002_gene839	NA	NA
UHGV-0035476_60	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0035476_60	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0035476_60	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0035476_60	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0035476_61	PHROG	phrog_32322	NA	unknown function
UHGV-0035476_61	UniRef90	UniRef90_A0A7U9CLF4	Ig-like_bact domain-containing protein	NA
UHGV-0035476_61	eggNOG-mapper	1232446.BAIE02000002_gene840	NA	NA
UHGV-0035476_61	Pfam	PF13754	NA	Big_3_4
UHGV-0035476_61	Structural annotation	PF13754	NA	NA
UHGV-0035476_62	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0035476_66	PHROG	phrog_1129	holin	lysis
UHGV-0035476_66	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0035476_66	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0035476_66	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0035476_66	Structural annotation	PF06946	NA	NA
UHGV-0035476_67	PHROG	phrog_4105	NA	unknown function
UHGV-0035476_67	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0035476_68	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035476_68	PHROG	phrog_3088	amidase	lysis
UHGV-0035476_68	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0035476_68	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0035476_68	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0035476_68	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0035476_68	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0035476_71	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035476_71	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-0035476_71	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0035476_71	Pfam	PF21817	CapR homology domain	CapR
UHGV-0035476_71	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0035476_73	eggNOG-mapper	1232446.BAIE02000010_gene1963	NA	NA
UHGV-0035476_73	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0035476_73	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0035476_74	eggNOG-mapper	525309.HMPREF0494_2162	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0035476_74	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA