UHGV-0035508

Genome information

Genome length 39,206 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035508
vOTU ID	vOTU-044455
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_17_RAU1014YZ__NODE_1221_length_39283_cov_41.958986
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.72
Jumbo phage	No

Genome content
Genome length	39,206 bps
GC content	50.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.09%
Average CDS length	622.16 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035508_1	PHROG	phrog_37900	NA	unknown function
UHGV-0035508_1	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0035508_1	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0035508_2	PHROG	phrog_31688	NA	unknown function
UHGV-0035508_2	eggNOG-mapper	1121866.AUGK01000006_gene893	NA	NA
UHGV-0035508_3	UniRef90	UniRef90_A0A1C6H462	LPD3 domain-containing protein	NA
UHGV-0035508_3	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0035508_3	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0035508_3	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0035508_6	eggNOG-mapper	1408437.JNJN01000087_gene969	NA	NA
UHGV-0035508_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0035508_7	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0035508_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0035508_9	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0035508_9	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0035508_9	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0035508_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0035508_10	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0035508_10	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0035508_10	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0035508_10	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0035508_11	PHROG	phrog_14606	NA	unknown function
UHGV-0035508_11	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0035508_12	Structural annotation	PF18152	NA	NA
UHGV-0035508_13	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0035508_13	Structural annotation	PF11650	NA	NA
UHGV-0035508_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0035508_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0035508_14	UniRef90	UniRef90_A0A810QAS9	Phage terminase large subunit	NA
UHGV-0035508_14	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0035508_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0035508_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0035508_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0035508_16	PHROG	phrog_13890	NA	unknown function
UHGV-0035508_16	UniRef90	UniRef90_A0A6N3FVH7	Arc domain-containing protein	NA
UHGV-0035508_16	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0035508_16	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0035508_17	PHROG	phrog_15863	NA	unknown function
UHGV-0035508_17	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0035508_17	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0035508_17	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0035508_19	Structural annotation	PF17917	NA	NA
UHGV-0035508_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035508_21	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0035508_21	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0035508_21	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0035508_23	PHROG	phrog_22543	NA	unknown function
UHGV-0035508_23	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0035508_24	PHROG	phrog_22543	NA	unknown function
UHGV-0035508_24	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0035508_25	Structural annotation	PF12092	NA	NA
UHGV-0035508_30	PHROG	phrog_38832	NA	unknown function
UHGV-0035508_30	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0035508_31	PHROG	phrog_4019	NA	unknown function
UHGV-0035508_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0035508_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0035508_33	UniRef90	UniRef90_A0A3D3Y454	Adenylyl-sulfate reductase	NA
UHGV-0035508_33	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0035508_33	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0035508_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0035508_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0035508_33	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0035508_34	PHROG	phrog_15768	NA	unknown function
UHGV-0035508_34	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0035508_34	Pfam	PF19808	NA	DUF6291
UHGV-0035508_34	Structural annotation	PF19808	NA	NA
UHGV-0035508_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0035508_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0035508_35	UniRef90	UniRef90_A0A3D1LE19	Single-stranded DNA-binding protein	NA
UHGV-0035508_35	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0035508_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0035508_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0035508_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0035508_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0035508_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0035508_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0035508_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0035508_36	UniRef90	UniRef90_A0A1Y4W4R3	Recombinase RecT	NA
UHGV-0035508_36	eggNOG-mapper	428125.CLOLEP_01822	RecT family	NA
UHGV-0035508_36	Pfam	PF03837	RecT family	RecT
UHGV-0035508_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0035508_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0035508_36	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0035508_37	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035508_37	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0035508_37	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0035508_37	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0035508_37	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0035508_37	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0035508_37	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0035508_38	Structural annotation	PF09943	NA	NA
UHGV-0035508_40	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0035508_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035508_41	UniRef90	UniRef90_R5HIC1	Helix-turn-helix domain protein	NA
UHGV-0035508_41	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0035508_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035508_41	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0035508_42	eggNOG-mapper	1408323.JQKK01000014_gene78	DNA/RNA non-specific endonuclease	NA
UHGV-0035508_42	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0035508_42	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0035508_42	Structural annotation	PF02805	NA	NA
UHGV-0035508_43	UniRef90	UniRef90_A0A3D3Y4M8	HTH cro/C1-type domain-containing protein	NA
UHGV-0035508_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035508_43	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0035508_44	KOfam	K14059	int; integrase	NA
UHGV-0035508_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0035508_44	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0035508_44	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0035508_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035508_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035508_44	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0035508_45	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0035508_45	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0035508_48	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0035508_48	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0035508_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035508_49	PHROG	phrog_9611	endolysin	lysis
UHGV-0035508_49	UniRef90	UniRef90_A0A1V5KCB7	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0035508_49	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0035508_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0035508_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0035508_49	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0035508_50	PHROG	phrog_13256	NA	unknown function
UHGV-0035508_50	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0035508_52	UniRef90	UniRef90_A0A1Y4UW55	Branched-chain amino acid ABC transporter permease	NA
UHGV-0035508_52	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0035508_56	PHROG	phrog_29409	NA	unknown function
UHGV-0035508_57	PHROG	phrog_37900	NA	unknown function
UHGV-0035508_57	UniRef90	UniRef90_A0A3D1L9V5	NA	NA
UHGV-0035508_57	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0035508_57	Pfam	PF19789	NA	DUF6273
UHGV-0035508_57	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0035508_57	Structural annotation	PF19789	NA	NA