UHGV-0035529

Genome information

Genome length 43,821 bps

CDS count 77

Completeness 80.77% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035529
vOTU ID	vOTU-018902
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_20_1180__NODE_2366_length_43821_cov_6.038520
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.76
Jumbo phage	No

Genome content
Genome length	43,821 bps
GC content	62.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	92.10%
Average CDS length	527.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035529_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0035529_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035529_1	UniRef90	UniRef90_A0A1C5W4N7	HNH endonuclease	NA
UHGV-0035529_1	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-0035529_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0035529_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035529_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035529_3	UniRef90	UniRef90_A0A1I6SH85	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035529_3	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0035529_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035529_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035529_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035529_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0035529_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035529_4	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0035529_4	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0035529_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035529_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035529_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035529_5	KOfam	K06904	NA	NA
UHGV-0035529_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0035529_5	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0035529_5	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0035529_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0035529_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0035529_5	COG	COG3740	Phage head maturation protease	NA
UHGV-0035529_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0035529_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035529_6	UniRef90	UniRef90_R5VT22	Phage major capsid protein HK97 family	NA
UHGV-0035529_6	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0035529_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035529_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035529_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035529_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035529_8	PHROG	phrog_5223	neck protein	connector
UHGV-0035529_8	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0035529_8	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-0035529_8	Structural annotation	TIGR01560	NA	NA
UHGV-0035529_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0035529_9	eggNOG-mapper	1134413.ANNK01000054_gene2237	head-tail adaptor	NA
UHGV-0035529_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0035529_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0035529_10	UniRef90	UniRef90_A0A6N7STF7	HK97 gp10 family phage protein	NA
UHGV-0035529_10	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0035529_10	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0035529_11	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0035529_11	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0035529_11	Structural annotation	PF09646	NA	NA
UHGV-0035529_12	PHROG	phrog_88	major tail protein	tail
UHGV-0035529_12	UniRef90	UniRef90_UPI00102F83A6	phage tail protein	NA
UHGV-0035529_12	eggNOG-mapper	879305.HMPREF9290_0133	Phage major tail protein, phi13 family	NA
UHGV-0035529_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0035529_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0035529_13	PHROG	phrog_709	NA	unknown function
UHGV-0035529_15	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0035529_15	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0035529_15	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0035529_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035529_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0035529_15	COG	COG1340	NA	NA
UHGV-0035529_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035529_17	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-0035529_17	eggNOG-mapper	1235793.C809_04663	NA	NA
UHGV-0035529_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0035529_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0035529_18	Structural annotation	NF001990	NA	NA
UHGV-0035529_19	PHROG	phrog_10091	holin	lysis
UHGV-0035529_19	UniRef90	UniRef90_A0A1H1L5E2	Holin, phage phi LC3 family	NA
UHGV-0035529_19	eggNOG-mapper	411465.PEPMIC_00750	Bacteriophage holin	NA
UHGV-0035529_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0035529_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0035529_19	COG	COG5546	NA	NA
UHGV-0035529_19	Structural annotation	COG5546	NA	NA
UHGV-0035529_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0035529_20	PHROG	phrog_2742	endolysin	lysis
UHGV-0035529_20	UniRef90	UniRef90_N2AYM9	MurNAc-LAA domain-containing protein	NA
UHGV-0035529_20	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035529_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0035529_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0035529_20	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0035529_22	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0035529_22	UniRef90	UniRef90_A0A1Y4RU15	Sugar ABC transporter ATP-binding protein	NA
UHGV-0035529_22	eggNOG-mapper	1519439.JPJG01000059_gene1941	NA	NA
UHGV-0035529_23	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0035529_23	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0035529_23	UniRef90	UniRef90_R8W249	Reverse transcriptase domain-containing protein	NA
UHGV-0035529_23	eggNOG-mapper	1203606.HMPREF1526_01923	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0035529_23	PADLOC	drt-UG4	DRT	DRT
UHGV-0035529_23	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0035529_23	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0035529_23	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0035529_24	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0035529_24	UniRef90	UniRef90_UPI0018971A8A	fibronectin type III domain-containing protein	NA
UHGV-0035529_24	eggNOG-mapper	1519439.JPJG01000059_gene1944	NA	NA
UHGV-0035529_24	Pfam	PF19789	NA	DUF6273
UHGV-0035529_24	Structural annotation	PF19789, PF18911, PF00041, MF_04116, NF032891, COG3979	NA	NA
UHGV-0035529_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0035529_29	PHROG	phrog_16490	NA	unknown function
UHGV-0035529_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0035529_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0035529_32	KOfam	K14059	int; integrase	NA
UHGV-0035529_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0035529_32	UniRef90	UniRef90_A0A7C2FKG0	Site-specific integrase	NA
UHGV-0035529_32	eggNOG-mapper	1449080.JQMV01000003_gene657	Belongs to the 'phage' integrase family	NA
UHGV-0035529_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035529_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0035529_32	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0035529_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0035529_33	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0035529_34	UniRef90	UniRef90_C4F8D4	HTH cro/C1-type domain-containing protein	NA
UHGV-0035529_34	eggNOG-mapper	521003.COLINT_02305	NA	NA
UHGV-0035529_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0035529_38	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0035529_38	eggNOG-mapper	686340.Metal_4000	PFAM Siphovirus Gp157	NA
UHGV-0035529_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0035529_38	Structural annotation	PF05565	NA	NA
UHGV-0035529_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0035529_39	UniRef90	UniRef90_UPI00096A271C	ERF family protein	NA
UHGV-0035529_39	eggNOG-mapper	637390.AFOH01000060_gene1105	ERF superfamily	NA
UHGV-0035529_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0035529_40	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0035529_41	PHROG	phrog_4973	NA	unknown function
UHGV-0035529_41	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0035529_41	eggNOG-mapper	205914.HS_1403	Helix-turn-helix domain	NA
UHGV-0035529_41	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0035529_41	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0035529_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0035529_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0035529_42	UniRef90	UniRef90_A0A316NY65	Single-stranded DNA-binding protein	NA
UHGV-0035529_42	eggNOG-mapper	1125712.HMPREF1316_0820	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0035529_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0035529_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0035529_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0035529_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0035529_42	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0035529_43	PHROG	phrog_16167	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035529_43	UniRef90	UniRef90_A0A5C9BNW8	Cytoplasmic protein	NA
UHGV-0035529_43	eggNOG-mapper	219305.MCAG_03853	NA	NA
UHGV-0035529_44	PHROG	phrog_28142	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035529_44	eggNOG-mapper	1125712.HMPREF1316_1536	NA	NA
UHGV-0035529_45	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0035529_45	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0035529_45	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-0035529_45	Structural annotation	COG1591	NA	NA
UHGV-0035529_49	KOfam	K06940	NA	NA
UHGV-0035529_49	PHROG	phrog_32498	NA	unknown function
UHGV-0035529_49	UniRef90	UniRef90_A0A7X9UBZ8	YkgJ family cysteine cluster protein	NA
UHGV-0035529_49	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0035529_49	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0035529_53	eggNOG-mapper	1121866.AUGK01000014_gene2067	NA	NA
UHGV-0035529_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0035529_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0035529_70	UniRef90	UniRef90_UPI000C24CD2A	antirestriction protein ArdA	NA