UHGV-0035594

Genome information

Genome length 37,033 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0035594
vOTU ID	vOTU-073165
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_2_2185__NODE_1338_length_37033_cov_9.060288
BioSample	SAMEA4766186
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.79
Jumbo phage	No

Genome content
Genome length	37,033 bps
GC content	44.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.19%
Average CDS length	611.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0035594_1	UniRef90	UniRef90_C0D8J2	HTH cro/C1-type domain-containing protein	NA
UHGV-0035594_1	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0035594_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0035594_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0035594_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0035594_3	PHROG	phrog_291	endolysin	lysis
UHGV-0035594_3	UniRef90	UniRef90_A0A1Q6MG54	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0035594_3	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0035594_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0035594_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0035594_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0035594_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0035594_4	PHROG	phrog_199	holin	lysis
UHGV-0035594_4	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-0035594_4	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0035594_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0035594_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0035594_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0035594_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0035594_5	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-0035594_6	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0035594_7	PHROG	phrog_13141	NA	unknown function
UHGV-0035594_7	UniRef90	UniRef90_A2F9B0	Gp1-related protein	NA
UHGV-0035594_7	eggNOG-mapper	658655.HMPREF0988_02549	NA	NA
UHGV-0035594_7	Structural annotation	PF20747	NA	NA
UHGV-0035594_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0035594_8	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-0035594_8	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0035594_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0035594_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0035594_9	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0035594_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0035594_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0035594_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0035594_10	UniRef90	UniRef90_A0A1Q6MG21	PhageMin_Tail domain-containing protein	NA
UHGV-0035594_10	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0035594_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0035594_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0035594_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0035594_12	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-0035594_12	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0035594_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0035594_13	PHROG	phrog_5509	neck protein	connector
UHGV-0035594_13	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0035594_13	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0035594_14	eggNOG-mapper	1384484.AEQU_1177	NA	NA
UHGV-0035594_14	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0035594_15	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0035594_15	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0035594_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0035594_16	PHROG	phrog_749	NA	unknown function
UHGV-0035594_16	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-0035594_16	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0035594_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0035594_17	UniRef90	UniRef90_A0A412EM78	Phage major capsid protein	NA
UHGV-0035594_17	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0035594_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0035594_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0035594_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0035594_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0035594_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0035594_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0035594_18	UniRef90	UniRef90_A0A1Q6MG19	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0035594_18	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0035594_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0035594_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0035594_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0035594_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0035594_19	UniRef90	UniRef90_A0A1Q6MFZ4	Phage portal protein	NA
UHGV-0035594_19	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0035594_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0035594_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0035594_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0035594_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0035594_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0035594_20	UniRef90	UniRef90_A0A1Q6MG31	Terminase	NA
UHGV-0035594_20	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0035594_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0035594_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0035594_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0035594_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0035594_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0035594_21	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0035594_21	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0035594_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0035594_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0035594_22	UniRef90	UniRef90_A0A1Q6MG73	HNH domain-containing protein	NA
UHGV-0035594_22	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0035594_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0035594_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0035594_23	PHROG	phrog_11237	NA	unknown function
UHGV-0035594_23	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0035594_26	PHROG	phrog_625	NA	unknown function
UHGV-0035594_26	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0035594_27	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0035594_28	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0035594_28	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0035594_28	eggNOG-mapper	1095750.HMPREF9970_1671	NA	NA
UHGV-0035594_28	Pfam	PF14359	NA	DUF4406
UHGV-0035594_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0035594_28	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0035594_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0035594_29	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0035594_29	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0035594_29	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0035594_29	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0035594_30	PHROG	phrog_7566	NA	unknown function
UHGV-0035594_30	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0035594_31	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0035594_32	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-0035594_34	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0035594_35	PHROG	phrog_15077	NA	unknown function
UHGV-0035594_35	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0035594_35	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-0035594_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0035594_36	PHROG	phrog_8470	NA	unknown function
UHGV-0035594_36	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0035594_36	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0035594_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0035594_36	Structural annotation	PF14284	NA	NA
UHGV-0035594_37	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0035594_38	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0035594_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0035594_38	UniRef90	UniRef90_A0A1Q6MG39	RNase H type-1 domain-containing protein	NA
UHGV-0035594_38	eggNOG-mapper	123214.PERMA_0423	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0035594_38	Pfam	PF00075	RNase H	RNase_H
UHGV-0035594_38	COG	COG0328	Ribonuclease HI	NA
UHGV-0035594_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0035594_39	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0035594_39	Structural annotation	PF01446	NA	NA
UHGV-0035594_40	PHROG	phrog_20014	NA	unknown function
UHGV-0035594_40	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-0035594_42	PHROG	phrog_6058	NA	unknown function
UHGV-0035594_42	UniRef90	UniRef90_A0A7X9GS36	Helix-turn-helix domain-containing protein	NA
UHGV-0035594_42	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0035594_42	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0035594_43	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0035594_43	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0035594_43	UniRef90	UniRef90_UPI0019570FFD	N-6 DNA methylase	NA
UHGV-0035594_43	eggNOG-mapper	1401065.HMPREF2130_08355	PFAM N-6 DNA methylase	NA
UHGV-0035594_43	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0035594_43	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0035594_43	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0035594_43	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0035594_44	Structural annotation	PF19005	NA	NA
UHGV-0035594_46	PHROG	phrog_3886	NA	unknown function
UHGV-0035594_46	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0035594_47	KOfam	K03744	lemA; LemA protein	NA
UHGV-0035594_47	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0035594_47	UniRef90	UniRef90_A0A414ZQW9	LemA family protein	NA
UHGV-0035594_47	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0035594_47	Pfam	PF04011	LemA family	LemA
UHGV-0035594_47	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0035594_47	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0035594_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0035594_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0035594_50	UniRef90	UniRef90_R5WNF4	HTH cro/C1-type domain-containing protein	NA
UHGV-0035594_50	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0035594_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035594_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0035594_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0035594_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0035594_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0035594_51	UniRef90	UniRef90_R5VT81	LexA repressor	NA
UHGV-0035594_51	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0035594_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0035594_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0035594_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0035594_51	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0035594_52	PHROG	phrog_4654	NA	unknown function
UHGV-0035594_52	UniRef90	UniRef90_A0A1Q6MG25	HIRAN domain-containing protein	NA
UHGV-0035594_52	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-0035594_52	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0035594_54	PHROG	phrog_13890	NA	unknown function
UHGV-0035594_54	UniRef90	UniRef90_A5Z406	Ribbon-helix-helix protein, CopG family	NA
UHGV-0035594_55	KOfam	K14059	int; integrase	NA
UHGV-0035594_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0035594_55	UniRef90	UniRef90_A0A1Q6MGA4	Site-specific integrase	NA
UHGV-0035594_55	eggNOG-mapper	742741.HMPREF9475_00397	Phage integrase family	NA
UHGV-0035594_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0035594_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0035594_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0035594_56	PHROG	phrog_13890	NA	unknown function
UHGV-0035594_56	eggNOG-mapper	411468.CLOSCI_01452	NA	NA