UHGV-0036378

Genome information

Genome length 34,815 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0036378
vOTU ID	vOTU-066992
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1965
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.87
Jumbo phage	No

Genome content
Genome length	34,815 bps
GC content	43.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.36%
Average CDS length	570.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0036378_1	KOfam	K14059	int; integrase	NA
UHGV-0036378_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0036378_1	UniRef90	UniRef90_A0A416HJF6	Site-specific integrase	NA
UHGV-0036378_1	eggNOG-mapper	1256908.HMPREF0373_01612	Phage integrase family	NA
UHGV-0036378_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0036378_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0036378_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0036378_3	UniRef90	UniRef90_UPI000E53C2F8	ribbon-helix-helix domain-containing protein	NA
UHGV-0036378_3	eggNOG-mapper	1501230.ET33_16755	NA	NA
UHGV-0036378_4	PHROG	phrog_3989	NA	unknown function
UHGV-0036378_4	UniRef90	UniRef90_A0A416HJF8	NAD-dependent DNA ligase	NA
UHGV-0036378_4	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0036378_4	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0036378_4	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0036378_4	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0036378_5	PHROG	phrog_20886	NA	unknown function
UHGV-0036378_5	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0036378_5	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0036378_5	Structural annotation	PF06114	NA	NA
UHGV-0036378_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0036378_6	UniRef90	UniRef90_A0A416HJJ6	XRE family transcriptional regulator	NA
UHGV-0036378_6	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0036378_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0036378_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0036378_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0036378_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0036378_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0036378_8	UniRef90	UniRef90_A0A3D5WRG0	XRE family transcriptional regulator	NA
UHGV-0036378_8	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0036378_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036378_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0036378_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0036378_11	PHROG	phrog_6058	NA	unknown function
UHGV-0036378_11	eggNOG-mapper	1460635.JCM19038_3443	NA	NA
UHGV-0036378_11	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0036378_12	PHROG	phrog_30930	NA	unknown function
UHGV-0036378_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0036378_16	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0036378_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0036378_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0036378_18	UniRef90	UniRef90_A0A416HJH0	ParB domain-containing protein	NA
UHGV-0036378_18	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0036378_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0036378_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0036378_18	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0036378_19	UniRef90	UniRef90_A0A3A8WMX4	HNH endonuclease	NA
UHGV-0036378_19	eggNOG-mapper	457396.CSBG_00170	HNH nucleases	NA
UHGV-0036378_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0036378_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0036378_19	Structural annotation	COG5126	NA	NA
UHGV-0036378_22	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0036378_23	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0036378_23	PHROG	phrog_200	lipoprotein	other
UHGV-0036378_23	UniRef90	UniRef90_A0A3R6QAY9	Prohibitin family protein	NA
UHGV-0036378_23	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0036378_23	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0036378_23	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0036378_23	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0036378_24	UniRef90	UniRef90_A0A3R6NTZ8	NA	NA
UHGV-0036378_24	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0036378_24	Pfam	PF04448	NA	DUF551
UHGV-0036378_26	PHROG	phrog_20593	NA	unknown function
UHGV-0036378_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0036378_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0036378_27	UniRef90	UniRef90_A0A3R6N219	Single-stranded DNA-binding protein	NA
UHGV-0036378_27	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-0036378_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0036378_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0036378_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0036378_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0036378_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0036378_28	eggNOG-mapper	1514668.JOOA01000002_gene996	NA	NA
UHGV-0036378_29	PHROG	phrog_24368	NA	unknown function
UHGV-0036378_29	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0036378_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0036378_30	eggNOG-mapper	1297617.JPJD01000020_gene311	NA	NA
UHGV-0036378_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0036378_31	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0036378_32	PHROG	phrog_1863	NA	unknown function
UHGV-0036378_32	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0036378_33	PHROG	phrog_14030	NA	unknown function
UHGV-0036378_33	UniRef90	UniRef90_A0A3R6PG27	SH3b domain-containing protein	NA
UHGV-0036378_33	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0036378_33	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0036378_33	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0036378_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0036378_34	UniRef90	UniRef90_UPI001C80B796	transposase	NA
UHGV-0036378_34	eggNOG-mapper	86416.Clopa_0334	transposase activity	NA
UHGV-0036378_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0036378_34	Structural annotation	PF07141	NA	NA
UHGV-0036378_36	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0036378_36	UniRef90	UniRef90_A0A416HJI3	HNH domain-containing protein	NA
UHGV-0036378_36	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0036378_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0036378_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0036378_36	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0036378_38	PHROG	phrog_19291	NA	unknown function
UHGV-0036378_38	eggNOG-mapper	938293.CAJU020000007_gene2126	NA	NA
UHGV-0036378_38	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0036378_39	PHROG	phrog_1066	NA	unknown function
UHGV-0036378_39	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0036378_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0036378_40	UniRef90	UniRef90_A0A416HJK1	Terminase large subunit	NA
UHGV-0036378_40	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0036378_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0036378_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0036378_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0036378_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0036378_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0036378_41	UniRef90	UniRef90_A0A3R6NU07	Phage portal protein	NA
UHGV-0036378_41	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0036378_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0036378_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0036378_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0036378_42	KOfam	K06904	NA	NA
UHGV-0036378_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0036378_42	UniRef90	UniRef90_A0A3R6KIW5	HK97 family phage prohead protease	NA
UHGV-0036378_42	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0036378_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0036378_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0036378_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0036378_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0036378_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0036378_43	UniRef90	UniRef90_A0A3R6N229	Phage major capsid protein	NA
UHGV-0036378_43	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-0036378_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0036378_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0036378_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0036378_43	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0036378_46	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0036378_47	PHROG	phrog_25	head closure Hc1	connector
UHGV-0036378_47	UniRef90	UniRef90_A0A416HJI0	Head-tail adaptor protein	NA
UHGV-0036378_47	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0036378_47	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0036378_47	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0036378_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0036378_48	Structural annotation	TIGR01725	NA	NA
UHGV-0036378_49	Structural annotation	PF05657	NA	NA
UHGV-0036378_50	PHROG	phrog_88	major tail protein	tail
UHGV-0036378_50	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0036378_50	eggNOG-mapper	649747.HMPREF0083_01004	Phage major tail protein phi13	NA
UHGV-0036378_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0036378_50	COG	COG5492	NA	NA
UHGV-0036378_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0036378_52	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0036378_52	PHROG	phrog_23464	NA	unknown function
UHGV-0036378_52	UniRef90	UniRef90_A0A6N2WBJ7	Chromosome partition protein Smc	NA
UHGV-0036378_52	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0036378_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0036378_52	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0036378_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0036378_53	UniRef90	UniRef90_A0A3R6NW12	Phage tail family protein	NA
UHGV-0036378_53	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-0036378_53	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0036378_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0036378_53	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0036378_54	PHROG	phrog_538	minor tail protein	tail
UHGV-0036378_54	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0036378_54	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0036378_54	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0036378_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0036378_55	PHROG	phrog_1220	head protein	head and packaging
UHGV-0036378_55	Structural annotation	PF20747	NA	NA