UHGV-0036404

Genome information

Genome length 28,209 bps

CDS count 47

Completeness 63.13% (medium-quality)

geNomad score 0.9679

Prediction confidence Confident

Genome information
Genome ID	UHGV-0036404
vOTU ID	vOTU-032290
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1658
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9679
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.89
Jumbo phage	No

Genome content
Genome length	28,209 bps
GC content	38.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	85.91%
Average CDS length	518.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0036404_1	UniRef90	UniRef90_A0A843EBN6	Phage portal protein (Fragment)	NA
UHGV-0036404_1	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0036404_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0036404_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0036404_2	UniRef90	UniRef90_A0A415G6S8	Terminase large subunit	NA
UHGV-0036404_2	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0036404_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0036404_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0036404_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0036404_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0036404_3	PHROG	phrog_1066	NA	unknown function
UHGV-0036404_5	PHROG	phrog_36886	NA	unknown function
UHGV-0036404_5	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0036404_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0036404_7	Structural annotation	PF17617, NF012201	NA	NA
UHGV-0036404_8	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0036404_8	UniRef90	UniRef90_A0A415G6V0	HNH endonuclease	NA
UHGV-0036404_8	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0036404_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0036404_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0036404_8	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0036404_9	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0036404_9	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0036404_9	eggNOG-mapper	1234679.BN424_2628	transposase activity	NA
UHGV-0036404_9	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0036404_9	Structural annotation	PF07141	NA	NA
UHGV-0036404_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0036404_10	PHROG	phrog_291	endolysin	lysis
UHGV-0036404_10	UniRef90	UniRef90_A0A415G6T2	Cpl-7 domain-containing protein	NA
UHGV-0036404_10	eggNOG-mapper	411469.EUBHAL_01497	lysozyme activity	NA
UHGV-0036404_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0036404_10	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0036404_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0036404_10	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0036404_11	PHROG	phrog_1863	NA	unknown function
UHGV-0036404_11	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-0036404_12	PHROG	phrog_443	holin	lysis
UHGV-0036404_12	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0036404_12	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0036404_12	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0036404_12	Structural annotation	PF16945	NA	NA
UHGV-0036404_13	UniRef90	UniRef90_A0A173S152	RNA_pol_Rpb1_2 domain-containing protein	NA
UHGV-0036404_13	Structural annotation	PF03412	NA	NA
UHGV-0036404_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0036404_14	UniRef90	UniRef90_A0A415G6V5	XRE family transcriptional regulator	NA
UHGV-0036404_14	eggNOG-mapper	1304866.K413DRAFT_4836	Helix-turn-helix XRE-family like proteins	NA
UHGV-0036404_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036404_14	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0036404_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0036404_15	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0036404_15	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0036404_15	Structural annotation	PF02996	NA	NA
UHGV-0036404_16	PHROG	phrog_6568	NA	unknown function
UHGV-0036404_17	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0036404_19	PHROG	phrog_31560	NA	unknown function
UHGV-0036404_19	eggNOG-mapper	796945.HMPREF1145_2028	NA	NA
UHGV-0036404_21	UniRef90	UniRef90_A0A843GEP3	NA	NA
UHGV-0036404_23	PHROG	phrog_8538	NA	unknown function
UHGV-0036404_23	eggNOG-mapper	1196322.A370_02189	NA	NA
UHGV-0036404_24	PHROG	phrog_7566	NA	unknown function
UHGV-0036404_24	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0036404_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0036404_25	PHROG	phrog_15982	NA	unknown function
UHGV-0036404_25	UniRef90	UniRef90_A0A415G6U9	ParB domain-containing protein	NA
UHGV-0036404_25	eggNOG-mapper	1235792.C808_00072	ParB-like nuclease domain	NA
UHGV-0036404_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0036404_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0036404_25	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0036404_27	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0036404_27	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0036404_27	UniRef90	UniRef90_A0A415G6V8	ParA family protein	NA
UHGV-0036404_27	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-0036404_27	Pfam	PF13614	AAA domain	AAA_31
UHGV-0036404_27	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0036404_27	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0036404_28	PHROG	phrog_17690	NA	unknown function
UHGV-0036404_28	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0036404_28	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0036404_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0036404_29	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0036404_29	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0036404_29	Structural annotation	PF21578	NA	NA
UHGV-0036404_32	PHROG	phrog_3777	NA	unknown function
UHGV-0036404_32	UniRef90	UniRef90_A0A415G6V1	NA	NA
UHGV-0036404_32	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0036404_32	Pfam	PF12957	NA	DUF3846
UHGV-0036404_32	Structural annotation	PF12957	NA	NA
UHGV-0036404_35	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-0036404_35	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0036404_35	Structural annotation	PF20063	NA	NA
UHGV-0036404_36	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0036404_36	Structural annotation	PF12441, NF041793, COG4710	NA	NA
UHGV-0036404_37	UniRef90	UniRef90_A0A415G6V2	Arc family DNA-binding protein	NA
UHGV-0036404_37	eggNOG-mapper	1151292.QEW_4373	Arc-like DNA binding domain	NA
UHGV-0036404_37	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0036404_37	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0036404_38	UniRef90	UniRef90_A0A415G6X6	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0036404_38	Pfam	PF05534	HicB family	HicB
UHGV-0036404_39	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0036404_39	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0036404_39	eggNOG-mapper	484770.UFO1_1687	NA	NA
UHGV-0036404_39	Structural annotation	COG2250	NA	NA
UHGV-0036404_40	PHROG	phrog_9607	NA	unknown function
UHGV-0036404_40	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0036404_40	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0036404_42	UniRef90	UniRef90_A0A415G6V7	XRE family transcriptional regulator	NA
UHGV-0036404_42	eggNOG-mapper	632245.CLP_2721	NA	NA
UHGV-0036404_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0036404_42	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0036404_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0036404_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0036404_43	UniRef90	UniRef90_A0A415G6W1	XRE family transcriptional regulator	NA
UHGV-0036404_43	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0036404_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036404_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0036404_43	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0036404_44	PHROG	phrog_87	metallo-protease	other
UHGV-0036404_44	UniRef90	UniRef90_UPI001E2890E0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0036404_44	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0036404_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0036404_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0036404_45	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0036404_45	UniRef90	UniRef90_A0A415G6W4	Abi family protein	NA
UHGV-0036404_45	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0036404_45	PADLOC	AbiD	AbiD	Abi
UHGV-0036404_45	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0036404_45	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0036404_45	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0036404_46	KOfam	K14059	int; integrase	NA
UHGV-0036404_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0036404_46	UniRef90	UniRef90_A0A415G6Y0	Site-specific integrase	NA
UHGV-0036404_46	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0036404_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0036404_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0036404_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0036404_47	KOfam	K03696	clpC; ATP-dependent Clp protease ATP-binding subunit ClpC	NA
UHGV-0036404_47	PHROG	phrog_4871	ATP-dependent protease	other
UHGV-0036404_47	UniRef90	UniRef90_A0A173S2R7	Negative regulator of genetic competence ClpC/MecB	NA
UHGV-0036404_47	eggNOG-mapper	411469.EUBHAL_01886	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	NA
UHGV-0036404_47	Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	Clp_N
UHGV-0036404_47	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0036404_47	Pfam	PF17871	AAA lid domain	AAA_lid_9
UHGV-0036404_47	Pfam	PF07724	AAA domain (Cdc48 subfamily)	AAA_2
UHGV-0036404_47	Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	ClpB_D2-small
UHGV-0036404_47	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0036404_47	Structural annotation	PF07724, PF10431, PF17871, PF05621, MF_00175, MF_03023, TIGR03346, COG0542	NA	NA