UHGV-0036595

Genome information

Genome length 50,800 bps

CDS count 82

Completeness 84.58% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0036595
vOTU ID	vOTU-035755
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1220
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.34
Jumbo phage	No

Genome content
Genome length	50,800 bps
GC content	40.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	90.65%
Average CDS length	564.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0036595_1	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0036595_1	PHROG	phrog_14556	NA	unknown function
UHGV-0036595_1	UniRef90	UniRef90_D4KZF6	Predicted hydrolase (Metallo-beta-lactamase superfamily)	NA
UHGV-0036595_1	eggNOG-mapper	556261.HMPREF0240_01005	domain protein	NA
UHGV-0036595_1	PADLOC	drt-cluster302	DRT	DRT
UHGV-0036595_1	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0036595_1	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0036595_2	KOfam	K14059	int; integrase	NA
UHGV-0036595_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0036595_2	UniRef90	UniRef90_A0A3R6B6C8	Site-specific integrase	NA
UHGV-0036595_2	eggNOG-mapper	411461.DORFOR_02986	NA	NA
UHGV-0036595_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0036595_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0036595_2	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0036595_3	UniRef90	UniRef90_A0A413Z5X3	LuxR family transcriptional regulator	NA
UHGV-0036595_3	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0036595_3	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0036595_3	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0036595_4	UniRef90	UniRef90_A0A413SPC3	NA	NA
UHGV-0036595_4	Pfam	PF20037	NA	DUF6440
UHGV-0036595_4	Structural annotation	PF20037	NA	NA
UHGV-0036595_7	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0036595_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0036595_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0036595_8	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0036595_8	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0036595_8	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0036595_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0036595_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0036595_8	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0036595_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0036595_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0036595_9	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-0036595_9	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0036595_9	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0036595_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0036595_9	COG	COG0338	DNA-adenine methylase	NA
UHGV-0036595_9	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0036595_11	PHROG	phrog_20593	NA	unknown function
UHGV-0036595_12	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0036595_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0036595_12	UniRef90	UniRef90_A0A3R6D3K6	Restriction alleviation protein, Lar family	NA
UHGV-0036595_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0036595_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0036595_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0036595_12	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0036595_14	PHROG	phrog_8684	NA	unknown function
UHGV-0036595_14	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-0036595_14	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0036595_14	Pfam	PF09643	YopX protein	YopX
UHGV-0036595_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0036595_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0036595_15	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0036595_16	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0036595_18	PHROG	phrog_15198	NA	unknown function
UHGV-0036595_18	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0036595_18	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0036595_18	Pfam	PF04448	NA	DUF551
UHGV-0036595_18	Structural annotation	NF041588	NA	NA
UHGV-0036595_19	PHROG	phrog_22292	NA	unknown function
UHGV-0036595_21	Structural annotation	PF17399	NA	NA
UHGV-0036595_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0036595_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0036595_24	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0036595_24	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0036595_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0036595_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0036595_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0036595_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0036595_25	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0036595_25	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0036595_25	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0036595_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0036595_25	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0036595_25	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0036595_26	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0036595_26	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0036595_26	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0036595_26	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0036595_26	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0036595_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0036595_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0036595_27	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-0036595_27	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0036595_27	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0036595_27	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0036595_27	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0036595_28	KOfam	K06940	NA	NA
UHGV-0036595_28	PHROG	phrog_32498	NA	unknown function
UHGV-0036595_28	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0036595_28	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0036595_28	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0036595_29	PHROG	phrog_25456	NA	unknown function
UHGV-0036595_30	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0036595_30	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0036595_30	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0036595_30	Pfam	PF03837	RecT family	RecT
UHGV-0036595_30	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0036595_32	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0036595_35	PHROG	phrog_2600	NA	unknown function
UHGV-0036595_35	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA
UHGV-0036595_36	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0036595_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0036595_36	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0036595_36	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0036595_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-0036595_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0036595_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0036595_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0036595_38	PHROG	phrog_26861	NA	unknown function
UHGV-0036595_38	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-0036595_38	eggNOG-mapper	1256908.HMPREF0373_01719	NA	NA
UHGV-0036595_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0036595_38	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0036595_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0036595_38	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0036595_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0036595_40	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0036595_40	UniRef90	UniRef90_A0A1Q9J883	Toxin Bro	NA
UHGV-0036595_40	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0036595_40	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0036595_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0036595_40	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0036595_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0036595_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0036595_45	UniRef90	UniRef90_A0A3R6F9H0	XRE family transcriptional regulator	NA
UHGV-0036595_45	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0036595_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036595_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0036595_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0036595_47	PHROG	phrog_17196	kinase	other
UHGV-0036595_47	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0036595_47	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0036595_49	PHROG	phrog_18190	NA	unknown function
UHGV-0036595_49	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0036595_49	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0036595_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0036595_49	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0036595_50	PHROG	phrog_1194	NA	unknown function
UHGV-0036595_50	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0036595_50	Pfam	PF20458	NA	DUF6711
UHGV-0036595_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0036595_53	PHROG	phrog_14275	NA	unknown function
UHGV-0036595_53	eggNOG-mapper	689781.AUJX01000006_gene893	NA	NA
UHGV-0036595_53	Structural annotation	PF11355, PF18368, TIGR02588, NF038353, COG5633	NA	NA
UHGV-0036595_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0036595_54	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0036595_54	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0036595_54	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0036595_54	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0036595_55	PHROG	phrog_14030	NA	unknown function
UHGV-0036595_55	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0036595_55	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0036595_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0036595_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0036595_55	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0036595_58	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0036595_58	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0036595_59	Structural annotation	PF05657	NA	NA
UHGV-0036595_60	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0036595_60	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0036595_60	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0036595_61	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0036595_62	PHROG	phrog_18218	NA	unknown function
UHGV-0036595_62	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0036595_62	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0036595_62	Structural annotation	PF06946	NA	NA
UHGV-0036595_63	PHROG	phrog_1863	NA	unknown function
UHGV-0036595_63	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0036595_64	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0036595_65	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0036595_65	Structural annotation	PF21169	NA	NA
UHGV-0036595_66	PHROG	phrog_29	major head protein	head and packaging
UHGV-0036595_66	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0036595_66	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0036595_66	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0036595_66	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0036595_67	PHROG	phrog_909	major head protein	head and packaging
UHGV-0036595_67	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0036595_67	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0036595_68	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0036595_69	PHROG	phrog_64	portal protein	head and packaging
UHGV-0036595_69	UniRef90	UniRef90_A0A3R6ASF4	Phage portal protein	NA
UHGV-0036595_69	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0036595_69	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0036595_69	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0036595_70	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0036595_70	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0036595_70	Structural annotation	PF02996	NA	NA
UHGV-0036595_71	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0036595_71	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0036595_71	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0036595_71	COG	COG5410	NA	NA
UHGV-0036595_71	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0036595_74	PHROG	phrog_25639	NA	unknown function
UHGV-0036595_74	eggNOG-mapper	397290.C810_01381	NA	NA