UHGV-0036617

Genome information

Genome length 39,691 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0036617
vOTU ID	vOTU-060141
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_17_CHE1007SZ__NODE_1977_length_39715_cov_562.028937
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.37
Jumbo phage	No

Genome content
Genome length	39,691 bps
GC content	52.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	88.71%
Average CDS length	590.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0036617_1	PHROG	phrog_15773	NA	unknown function
UHGV-0036617_1	Pfam	PF06692	Melon necrotic spot virus P7B protein	MNSV_P7B
UHGV-0036617_2	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0036617_2	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0036617_2	eggNOG-mapper	994601.G9BW80_9CAUD	nucleic acid binding	NA
UHGV-0036617_2	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0036617_3	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0036617_3	UniRef90	UniRef90_A0A2Z4Q9Z3	NA	NA
UHGV-0036617_3	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0036617_3	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0036617_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0036617_3	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0036617_4	Structural annotation	PF08962	NA	NA
UHGV-0036617_6	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0036617_6	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0036617_6	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0036617_6	Pfam	PF03837	RecT family	RecT
UHGV-0036617_6	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0036617_8	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0036617_8	UniRef90	UniRef90_A0A1C5T0L2	PD-(D/E)XK nuclease superfamily	NA
UHGV-0036617_8	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0036617_8	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0036617_12	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0036617_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0036617_13	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0036617_13	UniRef90	UniRef90_A0A644YPM1	HTH cro/C1-type domain-containing protein	NA
UHGV-0036617_13	eggNOG-mapper	411467.BACCAP_02820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0036617_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036617_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0036617_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0036617_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0036617_18	UniRef90	UniRef90_A0A8J6PFI8	Helix-turn-helix transcriptional regulator	NA
UHGV-0036617_18	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0036617_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0036617_18	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0036617_19	KOfam	K14059	int; integrase	NA
UHGV-0036617_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0036617_19	UniRef90	UniRef90_R6RH38	Prophage LambdaCh01 site-specific recombinase phage integrase family	NA
UHGV-0036617_19	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0036617_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0036617_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0036617_19	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0036617_20	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0036617_20	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0036617_23	Structural annotation	PF17917	NA	NA
UHGV-0036617_26	PHROG	phrog_15863	NA	unknown function
UHGV-0036617_26	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0036617_26	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0036617_26	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0036617_28	eggNOG-mapper	1504823.CCMM01000008_gene725	NA	NA
UHGV-0036617_28	Structural annotation	PF10723	NA	NA
UHGV-0036617_29	eggNOG-mapper	1378168.N510_01472	NA	NA
UHGV-0036617_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0036617_30	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0036617_30	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0036617_30	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0036617_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0036617_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0036617_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0036617_32	PHROG	phrog_156	portal protein	head and packaging
UHGV-0036617_32	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0036617_32	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0036617_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0036617_34	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0036617_34	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0036617_34	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0036617_34	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0036617_35	PHROG	phrog_1863	NA	unknown function
UHGV-0036617_35	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0036617_36	PHROG	phrog_1129	holin	lysis
UHGV-0036617_36	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0036617_36	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0036617_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0036617_36	Structural annotation	PF06946	NA	NA
UHGV-0036617_37	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0036617_37	Structural annotation	PF11650	NA	NA
UHGV-0036617_38	Structural annotation	PF16677	NA	NA
UHGV-0036617_39	PHROG	phrog_5107	amidase	lysis
UHGV-0036617_39	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0036617_39	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0036617_39	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0036617_40	PHROG	phrog_892	tail fiber protein	tail
UHGV-0036617_40	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0036617_40	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0036617_41	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0036617_44	PHROG	phrog_30034	NA	unknown function
UHGV-0036617_44	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0036617_44	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0036617_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0036617_44	Structural annotation	PF14600	NA	NA
UHGV-0036617_45	PHROG	phrog_20388	endolysin	lysis
UHGV-0036617_45	UniRef90	UniRef90_UPI00189D4A1D	phage tail tip lysozyme	NA
UHGV-0036617_45	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0036617_45	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0036617_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0036617_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0036617_45	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0036617_46	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0036617_47	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0036617_47	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0036617_47	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0036617_48	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0036617_50	eggNOG-mapper	1121405.dsmv_2591	NA	NA
UHGV-0036617_51	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0036617_51	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0036617_51	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0036617_51	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0036617_51	Pfam	PF00692	dUTPase	dUTPase
UHGV-0036617_51	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0036617_51	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0036617_51	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0036617_52	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0036617_52	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0036617_52	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0036617_52	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0036617_52	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0036617_52	Structural annotation	PF00196, MF_00959, NF006158, COG1191	NA	NA
UHGV-0036617_56	PHROG	phrog_22543	NA	unknown function
UHGV-0036617_59	eggNOG-mapper	749222.Nitsa_1823	C-5 cytosine-specific DNA methylase	NA
UHGV-0036617_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0036617_60	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA