UHGV-0036703

Genome information

vOTU vOTU-019143

Genome length 37,090 bps

CDS count 46

Completeness 64.97% (medium-quality)

geNomad score 0.9606

Prediction confidence Confident

Genome information
Genome ID	UHGV-0036703
vOTU ID	vOTU-019143
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_7_RAU0027AZ__NODE_2705_length_37090_cov_5.232243
BioSample	SAMEA11460267
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	64.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9606
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.94
Jumbo phage	No

Genome content
Genome length	37,090 bps
GC content	50.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.45%
Average CDS length	772.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0036703_3	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0036703_3	UniRef90	UniRef90_G8SJJ2	Putative nucleotidase	NA
UHGV-0036703_3	eggNOG-mapper	1229203.KI301992_gene693	AAA domain	NA
UHGV-0036703_3	COG	COG4639	Predicted kinase	NA
UHGV-0036703_9	PHROG	phrog_419	NA	unknown function
UHGV-0036703_9	UniRef90	UniRef90_A0A3F3A3T2	Gp9	NA
UHGV-0036703_9	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0036703_9	Structural annotation	PF14083	NA	NA
UHGV-0036703_14	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0036703_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0036703_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0036703_14	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0036703_14	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0036703_14	Structural annotation	PF14354, NF007260, COG3422	NA	NA
UHGV-0036703_17	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0036703_17	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0036703_17	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0036703_19	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0036703_19	PHROG	phrog_14430	NA	unknown function
UHGV-0036703_19	UniRef90	UniRef90_A0A1W9SBS6	AAA_15 domain-containing protein	NA
UHGV-0036703_19	eggNOG-mapper	1034807.FBFL15_0679	AAA ATPase domain	NA
UHGV-0036703_19	PADLOC	AAA_21	NA	NA
UHGV-0036703_19	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0036703_19	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0036703_19	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0036703_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0036703_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0036703_21	UniRef90	UniRef90_A0A7T2CTG4	Terminase small subunit	NA
UHGV-0036703_21	eggNOG-mapper	387092.NIS_0464	Terminase small subunit	NA
UHGV-0036703_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0036703_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0036703_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0036703_22	UniRef90	UniRef90_A0A6M3K7S1	Putative terminase	NA
UHGV-0036703_22	eggNOG-mapper	1408428.JNJP01000030_gene963	Terminase RNaseH-like domain	NA
UHGV-0036703_22	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0036703_22	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0036703_24	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0036703_24	UniRef90	UniRef90_A0A3C1FAU3	Phage tail protein	NA
UHGV-0036703_24	eggNOG-mapper	1200557.JHWV01000001_gene275	Bacteriophage head to tail connecting protein	NA
UHGV-0036703_24	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0036703_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0036703_25	PHROG	phrog_528	NA	unknown function
UHGV-0036703_26	PHROG	phrog_458	protease	other
UHGV-0036703_26	UniRef90	UniRef90_A0A1Y4DJB1	Death domain-containing protein	NA
UHGV-0036703_26	eggNOG-mapper	1150626.PHAMO_180123	NA	NA
UHGV-0036703_27	PHROG	phrog_212	major head protein	head and packaging
UHGV-0036703_27	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-0036703_27	eggNOG-mapper	1072685.IX83_07085	NA	NA
UHGV-0036703_27	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0036703_27	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0036703_28	PHROG	phrog_427	NA	unknown function
UHGV-0036703_28	UniRef90	UniRef90_A0A6G5YJN2	BIG2 domain-containing protein	NA
UHGV-0036703_28	eggNOG-mapper	1200557.JHWV01000001_gene271	NA	NA
UHGV-0036703_28	Pfam	PF21190	Bbp16	Bbp16
UHGV-0036703_28	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0036703_29	PHROG	phrog_394	tail protein	tail
UHGV-0036703_29	eggNOG-mapper	76869.PputGB1_1754	NA	NA
UHGV-0036703_29	Structural annotation	PF17212	NA	NA
UHGV-0036703_30	PHROG	phrog_376	tail protein	tail
UHGV-0036703_30	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0036703_30	eggNOG-mapper	1123288.SOV_1c10720	NA	NA
UHGV-0036703_31	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0036703_31	eggNOG-mapper	1188795.K7ZPX6_9CAUD	NA	NA
UHGV-0036703_31	Structural annotation	PF11039, MF_02210, NF011709, COG0456	NA	NA
UHGV-0036703_34	PHROG	phrog_616	NA	unknown function
UHGV-0036703_34	eggNOG-mapper	1027273.GZ77_06440	competence protein	NA
UHGV-0036703_34	Pfam	PF18799	Large polyvalent protein-associated domain 5	LPD5
UHGV-0036703_34	Pfam	PF18796	Large polyvalent protein-associated domain 1	LPD1
UHGV-0036703_34	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0036703_35	PHROG	phrog_1640	tail protein	tail
UHGV-0036703_35	eggNOG-mapper	941449.dsx2_2650	NA	NA
UHGV-0036703_36	PHROG	phrog_1640	tail protein	tail
UHGV-0036703_36	eggNOG-mapper	665942.HMPREF1022_00147	NA	NA
UHGV-0036703_36	Structural annotation	PF03906	NA	NA
UHGV-0036703_41	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0036703_41	PHROG	phrog_7	endolysin	lysis
UHGV-0036703_41	UniRef90	UniRef90_A0A1Y4DMM0	Lysozyme	NA
UHGV-0036703_41	eggNOG-mapper	522772.Dacet_1138	cytolysis by virus of host cell	NA
UHGV-0036703_41	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0036703_41	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0036703_41	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0036703_42	PHROG	phrog_2428	NA	unknown function
UHGV-0036703_42	UniRef90	UniRef90_A0A6M3J7T5	Putative structural protein	NA
UHGV-0036703_42	eggNOG-mapper	1009370.ALO_12376	NA	NA
UHGV-0036703_42	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0036703_45	UniRef90	UniRef90_UPI0003B5564A	ribonucleoside-triphosphate reductase	NA
UHGV-0036703_45	eggNOG-mapper	944480.ATUV01000001_gene645	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0036703_45	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0036703_45	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0036703_46	KOfam	K02650	pilA; type IV pilus assembly protein PilA	NA
UHGV-0036703_46	PHROG	phrog_27437	NA	unknown function
UHGV-0036703_46	UniRef90	UniRef90_B2KE65	PilE-like protein	NA
UHGV-0036703_46	eggNOG-mapper	1313304.CALK_1098	Prokaryotic N-terminal methylation motif	NA
UHGV-0036703_46	Pfam	PF07963	Prokaryotic N-terminal methylation motif	N_methyl
UHGV-0036703_46	NCBIFam	TIGR02532.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA
UHGV-0036703_46	COG	COG4968	Type IV pilus assembly protein PilE	NA