UHGV-0037052

Genome information

Genome length 48,497 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037052
vOTU ID	vOTU-064262
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_1131
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.01
Jumbo phage	No

Genome content
Genome length	48,497 bps
GC content	46.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.46%
Average CDS length	605.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037052_2	UniRef90	UniRef90_A0A374P9A5	Toxin-antitoxin system protein	NA
UHGV-0037052_2	eggNOG-mapper	1235798.C817_02113	NA	NA
UHGV-0037052_2	Structural annotation	PF19891, TIGR04563, COG4877	NA	NA
UHGV-0037052_3	PHROG	phrog_6745	endolysin	lysis
UHGV-0037052_3	UniRef90	UniRef90_A0A6N3EAD2	Autolysin	NA
UHGV-0037052_3	eggNOG-mapper	1304866.K413DRAFT_4748	NA	NA
UHGV-0037052_3	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0037052_4	PHROG	phrog_443	holin	lysis
UHGV-0037052_4	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0037052_4	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0037052_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0037052_4	Structural annotation	PF16945	NA	NA
UHGV-0037052_5	PHROG	phrog_4105	NA	unknown function
UHGV-0037052_5	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0037052_6	PHROG	phrog_30220	NA	unknown function
UHGV-0037052_6	eggNOG-mapper	585501.HMPREF6123_0821	NA	NA
UHGV-0037052_7	PHROG	phrog_18725	NA	unknown function
UHGV-0037052_7	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0037052_8	PHROG	phrog_19111	NA	unknown function
UHGV-0037052_8	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0037052_8	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0037052_9	PHROG	phrog_13589	NA	unknown function
UHGV-0037052_9	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0037052_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0037052_10	PHROG	phrog_13879	NA	unknown function
UHGV-0037052_10	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0037052_10	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0037052_11	PHROG	phrog_1194	NA	unknown function
UHGV-0037052_11	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0037052_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0037052_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0037052_12	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0037052_12	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0037052_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0037052_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0037052_13	PHROG	phrog_8355	NA	unknown function
UHGV-0037052_13	UniRef90	UniRef90_UPI001A9A799B	Gp15 family bacteriophage protein	NA
UHGV-0037052_13	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0037052_14	PHROG	phrog_8300	NA	unknown function
UHGV-0037052_14	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0037052_14	Structural annotation	PF06854	NA	NA
UHGV-0037052_15	PHROG	phrog_820	major tail protein	tail
UHGV-0037052_15	eggNOG-mapper	483218.BACPEC_01149	domain, Protein	NA
UHGV-0037052_15	COG	COG5492	NA	NA
UHGV-0037052_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0037052_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0037052_16	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0037052_16	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0037052_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0037052_16	Structural annotation	PF12691	NA	NA
UHGV-0037052_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0037052_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0037052_18	PHROG	phrog_8710	NA	unknown function
UHGV-0037052_18	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0037052_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0037052_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0037052_19	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0037052_20	PHROG	phrog_1378	NA	unknown function
UHGV-0037052_20	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0037052_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0037052_21	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0037052_21	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0037052_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0037052_22	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0037052_22	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0037052_22	UniRef90	UniRef90_A0A374P9J7	RNA polymerase subunit sigma-70	NA
UHGV-0037052_22	eggNOG-mapper	742735.HMPREF9467_02386	Sigma-70, region 4	NA
UHGV-0037052_22	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0037052_22	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0037052_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0037052_22	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0037052_22	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0037052_22	Structural annotation	PF04545, PF04542, PF04539, MF_00963, NF006666, COG0568	NA	NA
UHGV-0037052_23	eggNOG-mapper	1304866.K413DRAFT_0791	NA	NA
UHGV-0037052_23	AcrCatalog	cluster_8902	NA	NA
UHGV-0037052_23	Structural annotation	PF10944	NA	NA
UHGV-0037052_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0037052_25	eggNOG-mapper	397290.C810_03456	NA	NA
UHGV-0037052_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0037052_26	eggNOG-mapper	1235792.C808_01547	NA	NA
UHGV-0037052_26	Structural annotation	PF14265	NA	NA
UHGV-0037052_27	UniRef90	UniRef90_A0A396MNZ3	Chemotaxis protein	NA
UHGV-0037052_27	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0037052_27	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0037052_32	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0037052_32	UniRef90	UniRef90_A0A374PA77	Virulence-associated protein E	NA
UHGV-0037052_32	eggNOG-mapper	500632.CLONEX_01998	Virulence-associated protein E	NA
UHGV-0037052_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0037052_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0037052_32	Structural annotation	PF05272, MF_04000, NF005477, COG5545	NA	NA
UHGV-0037052_33	eggNOG-mapper	397290.C810_03449	NA	NA
UHGV-0037052_34	PHROG	phrog_989	NA	unknown function
UHGV-0037052_34	UniRef90	UniRef90_A0A374PBB5	LysR family transcriptional regulator	NA
UHGV-0037052_34	eggNOG-mapper	1123009.AUID01000008_gene810	NA	NA
UHGV-0037052_34	Structural annotation	PF11372	NA	NA
UHGV-0037052_36	UniRef90	UniRef90_A0A374P9D2	XRE family transcriptional regulator	NA
UHGV-0037052_36	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-0037052_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0037052_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0037052_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0037052_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0037052_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0037052_37	UniRef90	UniRef90_A0A374PBN7	XRE family transcriptional regulator	NA
UHGV-0037052_37	eggNOG-mapper	97138.C820_02581	sequence-specific DNA binding	NA
UHGV-0037052_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0037052_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0037052_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0037052_37	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0037052_38	KOfam	K14059	int; integrase	NA
UHGV-0037052_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0037052_38	UniRef90	UniRef90_A0A374P9K2	Site-specific integrase	NA
UHGV-0037052_38	eggNOG-mapper	1304866.K413DRAFT_0804	Belongs to the 'phage' integrase family	NA
UHGV-0037052_38	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0037052_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0037052_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037052_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037052_38	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0037052_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0037052_39	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0037052_40	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0037052_40	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0037052_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0037052_42	UniRef90	UniRef90_A0A374PBY0	Minor capsid protein	NA
UHGV-0037052_42	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0037052_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0037052_42	COG	COG2369	NA	NA
UHGV-0037052_42	Structural annotation	PF06152	NA	NA
UHGV-0037052_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-0037052_43	UniRef90	UniRef90_A0A174WUZ7	Phage minor capsid protein	NA
UHGV-0037052_43	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0037052_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0037052_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0037052_44	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0037052_44	UniRef90	UniRef90_A0A174WYX0	Phage terminase, large subunit	NA
UHGV-0037052_44	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0037052_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0037052_44	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0037052_45	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0037052_45	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0037052_45	UniRef90	UniRef90_A0A374P9L2	Terminase small subunit	NA
UHGV-0037052_45	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0037052_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0037052_45	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0037052_45	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0037052_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0037052_47	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0037052_47	Structural annotation	PF02996	NA	NA
UHGV-0037052_50	Structural annotation	PF11132, NF007981	NA	NA
UHGV-0037052_51	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0037052_51	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0037052_51	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0037052_51	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0037052_51	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0037052_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0037052_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0037052_51	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0037052_52	UniRef90	UniRef90_A0A3E2WD56	NA	NA
UHGV-0037052_54	eggNOG-mapper	1304866.K413DRAFT_0822	NA	NA
UHGV-0037052_55	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0037052_55	UniRef90	UniRef90_A0A374PA98	NA	NA
UHGV-0037052_55	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0037052_55	Pfam	PF06048	NA	DUF927
UHGV-0037052_55	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0037052_55	COG	COG5519	NA	NA
UHGV-0037052_55	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0037052_56	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0037052_56	PHROG	phrog_11992	NA	unknown function
UHGV-0037052_56	UniRef90	UniRef90_A0A1C5TEL2	DNA primase	NA
UHGV-0037052_56	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-0037052_56	PADLOC	drt-UG29	DRT	DRT
UHGV-0037052_56	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0037052_56	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0037052_56	Structural annotation	PF01807	NA	NA
UHGV-0037052_57	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0037052_57	UniRef90	UniRef90_A0A374P9F1	ERCC4 domain-containing protein	NA
UHGV-0037052_57	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0037052_57	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0037052_57	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0037052_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0037052_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0037052_58	UniRef90	UniRef90_A0A374PBD4	Single-stranded DNA-binding protein	NA
UHGV-0037052_58	eggNOG-mapper	1298920.KI911353_gene4869	Single-stranded DNA-binding protein	NA
UHGV-0037052_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0037052_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0037052_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0037052_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0037052_58	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0037052_59	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0037052_59	UniRef90	UniRef90_A0A374P9M3	ERF superfamily protein	NA
UHGV-0037052_59	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0037052_59	Pfam	PF04404	ERF superfamily	ERF
UHGV-0037052_59	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0037052_60	UniRef90	UniRef90_A0A374P9F4	Phosphatase	NA
UHGV-0037052_60	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-0037052_61	UniRef90	UniRef90_A0A374PBQ3	Trigger factor	NA
UHGV-0037052_61	eggNOG-mapper	1298920.KI911353_gene4872	NA	NA
UHGV-0037052_66	UniRef90	UniRef90_A0A374P9Q2	XRE family transcriptional regulator	NA
UHGV-0037052_66	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0037052_66	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0037052_67	UniRef90	UniRef90_A0A374PB68	XRE family transcriptional regulator	NA
UHGV-0037052_67	eggNOG-mapper	411902.CLOBOL_02555	COG COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0037052_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0037052_67	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0037052_68	PHROG	phrog_1914	NA	unknown function
UHGV-0037052_68	UniRef90	UniRef90_A0A374PC06	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0037052_68	eggNOG-mapper	411490.ANACAC_00619	IrrE N-terminal-like domain	NA
UHGV-0037052_68	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0037052_68	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0037052_69	PHROG	phrog_10292	NA	unknown function
UHGV-0037052_69	UniRef90	UniRef90_A0A374PAA9	TM2 domain-containing protein	NA
UHGV-0037052_69	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0037052_69	Pfam	PF05154	TM2 domain	TM2
UHGV-0037052_69	COG	COG2314	NA	NA
UHGV-0037052_69	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0037052_70	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0037052_70	UniRef90	UniRef90_A0A374P9F7	Immunity protein	NA
UHGV-0037052_70	eggNOG-mapper	702450.CUW_1238	Host cell surface-exposed lipoprotein	NA
UHGV-0037052_70	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0037052_70	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0037052_70	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0037052_71	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0037052_71	PHROG	phrog_95	integrase	integration and excision
UHGV-0037052_71	UniRef90	UniRef90_D3AJD3	Resolvase, N-terminal domain protein	NA
UHGV-0037052_71	eggNOG-mapper	1163671.JAGI01000001_gene335	Resolvase, N terminal domain	NA
UHGV-0037052_71	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0037052_71	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0037052_71	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0037052_71	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0037052_72	KOfam	K04759	feoB; ferrous iron transport protein B	NA
UHGV-0037052_72	UniRef90	UniRef90_D3AJD4	FeoB-type G domain-containing protein	NA
UHGV-0037052_72	eggNOG-mapper	1298920.KI911353_gene3871	Ferrous iron transport protein B	NA
UHGV-0037052_72	Pfam	PF02421	Ferrous iron transport protein B	FeoB_N
UHGV-0037052_72	COG	COG0370	Fe2+ transporter FeoB	NA