UHGV-0037187

Genome information

Genome length 34,052 bps

CDS count 59

Completeness 91.16% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037187
vOTU ID	vOTU-061109
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_17_RAJ0019YZ__NODE_1780_length_34052_cov_16.833966
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.03
Jumbo phage	No

Genome content
Genome length	34,052 bps
GC content	50.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	87.80%
Average CDS length	511.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037187_1	KOfam	K14059	int; integrase	NA
UHGV-0037187_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0037187_1	UniRef90	UniRef90_U2UCK2	Site-specific recombinase, phage integrase family	NA
UHGV-0037187_1	eggNOG-mapper	1321782.HMPREF1986_00315	Phage integrase family	NA
UHGV-0037187_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0037187_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037187_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037187_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0037187_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0037187_2	PHROG	phrog_8036	NA	unknown function
UHGV-0037187_2	UniRef90	UniRef90_A0A1M6TGW2	DNA-damage-inducible protein D	NA
UHGV-0037187_2	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-0037187_2	AcrCatalog	cluster_17589	NA	NA
UHGV-0037187_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0037187_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0037187_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0037187_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0037187_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0037187_3	PHROG	phrog_20886	NA	unknown function
UHGV-0037187_3	Structural annotation	PF06114	NA	NA
UHGV-0037187_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0037187_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0037187_4	UniRef90	UniRef90_UPI000488586D	helix-turn-helix domain-containing protein	NA
UHGV-0037187_4	eggNOG-mapper	1111454.HMPREF1250_1030	Helix-turn-helix domain protein	NA
UHGV-0037187_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0037187_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0037187_4	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0037187_5	UniRef90	UniRef90_C7G6N8	DNA-binding helix-turn-helix protein	NA
UHGV-0037187_5	eggNOG-mapper	658086.HMPREF0994_04275	NA	NA
UHGV-0037187_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0037187_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0037187_19	PHROG	phrog_24368	NA	unknown function
UHGV-0037187_20	PHROG	phrog_824	NA	unknown function
UHGV-0037187_20	UniRef90	UniRef90_A0A1Y3WFH5	VRR-NUC domain-containing protein	NA
UHGV-0037187_20	eggNOG-mapper	1232452.BAIB02000007_gene1645	VRR_NUC	NA
UHGV-0037187_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0037187_20	Structural annotation	PF08774	NA	NA
UHGV-0037187_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0037187_23	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0037187_23	Structural annotation	PF11726	NA	NA
UHGV-0037187_24	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0037187_24	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0037187_28	PHROG	phrog_11237	NA	unknown function
UHGV-0037187_28	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0037187_30	UniRef90	UniRef90_A0A3A9FI03	Chemotaxis protein	NA
UHGV-0037187_30	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0037187_31	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0037187_31	UniRef90	UniRef90_A0A3E4GMG2	HNH endonuclease	NA
UHGV-0037187_31	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0037187_32	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0037187_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0037187_33	UniRef90	UniRef90_A0A1H6UXL9	Phage Terminase	NA
UHGV-0037187_33	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0037187_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0037187_33	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0037187_34	PHROG	phrog_104	portal protein	head and packaging
UHGV-0037187_34	UniRef90	UniRef90_UPI0009847372	phage portal protein	NA
UHGV-0037187_34	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0037187_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0037187_35	PHROG	phrog_104	portal protein	head and packaging
UHGV-0037187_35	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0037187_36	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0037187_36	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0037187_36	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0037187_36	Pfam	PF21814	NA	DUF6883
UHGV-0037187_36	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0037187_36	Structural annotation	PF21814	NA	NA
UHGV-0037187_38	PHROG	phrog_3675	NA	unknown function
UHGV-0037187_38	UniRef90	UniRef90_A0A1H9BUF5	YjcQ protein	NA
UHGV-0037187_38	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-0037187_38	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0037187_38	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0037187_39	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0037187_39	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0037187_39	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0037187_39	Structural annotation	PF14265	NA	NA
UHGV-0037187_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0037187_40	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0037187_40	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0037187_40	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0037187_42	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0037187_42	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0037187_42	Structural annotation	PF09355	NA	NA
UHGV-0037187_43	PHROG	phrog_501	head closure Hc1	connector
UHGV-0037187_43	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0037187_43	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0037187_44	PHROG	phrog_387	neck protein	connector
UHGV-0037187_44	eggNOG-mapper	1214184.ALKY01000039_gene914	NA	NA
UHGV-0037187_45	PHROG	phrog_123	tail terminator	connector
UHGV-0037187_45	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0037187_45	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0037187_45	Structural annotation	PF06141	NA	NA
UHGV-0037187_46	PHROG	phrog_117	major tail protein	tail
UHGV-0037187_46	UniRef90	UniRef90_A0A356C4M0	Phage tail protein	NA
UHGV-0037187_46	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0037187_46	COG	COG5492	NA	NA
UHGV-0037187_46	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0037187_47	PHROG	phrog_1526	NA	unknown function
UHGV-0037187_47	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0037187_48	PHROG	phrog_1633	NA	unknown function
UHGV-0037187_48	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0037187_48	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0037187_48	Pfam	PF17318	NA	DUF5361
UHGV-0037187_48	Structural annotation	PF17318	NA	NA
UHGV-0037187_49	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0037187_49	UniRef90	UniRef90_UPI000DFF7CD9	PblA	NA
UHGV-0037187_49	eggNOG-mapper	482234.SCAZ3_03770	phage tail tape measure protein	NA
UHGV-0037187_49	COG	COG5412	Phage-related protein	NA
UHGV-0037187_49	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0037187_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0037187_50	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0037187_50	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0037187_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0037187_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0037187_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0037187_51	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-0037187_51	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0037187_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0037187_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0037187_51	COG	COG4926	Phage-related protein	NA
UHGV-0037187_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0037187_52	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0037187_52	PHROG	phrog_8745	tail fiber protein	tail
UHGV-0037187_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0037187_53	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0037187_53	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0037187_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0037187_53	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0037187_54	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0037187_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0037187_54	UniRef90	UniRef90_A0A416L1N4	Integrase	NA
UHGV-0037187_54	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0037187_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037187_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0037187_54	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0037187_56	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-0037187_57	PHROG	phrog_8908	NA	unknown function
UHGV-0037187_58	PHROG	phrog_199	holin	lysis
UHGV-0037187_58	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0037187_58	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0037187_58	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0037187_58	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0037187_58	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0037187_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0037187_59	PHROG	phrog_14030	NA	unknown function
UHGV-0037187_59	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0037187_59	eggNOG-mapper	411468.CLOSCI_01513	NA	NA
UHGV-0037187_59	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0037187_59	Structural annotation	PF18342, NF041850, COG3807	NA	NA