UHGV-0037464

Genome information

Genome length 29,307 bps

CDS count 54

Completeness 88.59% (medium-quality)

geNomad score 0.9532

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037464
vOTU ID	vOTU-035315
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2138
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9532
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.6
Jumbo phage	No

Genome content
Genome length	29,307 bps
GC content	31.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.31%
Average CDS length	488.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037464_1	Structural annotation	PF12961, MF_00771, NF002617, COG3215	NA	NA
UHGV-0037464_2	eggNOG-mapper	1230342.CTM_17037	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0037464_8	PHROG	phrog_24103	NA	unknown function
UHGV-0037464_8	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0037464_8	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0037464_10	PHROG	phrog_9994	NA	unknown function
UHGV-0037464_10	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-0037464_10	Structural annotation	PF20747	NA	NA
UHGV-0037464_11	PHROG	phrog_538	minor tail protein	tail
UHGV-0037464_11	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0037464_11	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-0037464_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0037464_12	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0037464_12	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-0037464_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0037464_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0037464_13	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-0037464_13	eggNOG-mapper	1232446.BAIE02000011_gene1587	domain protein	NA
UHGV-0037464_13	COG	COG1511	NA	NA
UHGV-0037464_13	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0037464_14	PHROG	phrog_1633	NA	unknown function
UHGV-0037464_14	UniRef90	UniRef90_UPI000A18F792	NA	NA
UHGV-0037464_14	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0037464_14	Pfam	PF17318	NA	DUF5361
UHGV-0037464_14	Structural annotation	PF17318	NA	NA
UHGV-0037464_15	PHROG	phrog_1526	NA	unknown function
UHGV-0037464_15	UniRef90	UniRef90_D2BQF7	NA	NA
UHGV-0037464_15	eggNOG-mapper	1231377.C426_1729	NA	NA
UHGV-0037464_16	PHROG	phrog_117	major tail protein	tail
UHGV-0037464_16	UniRef90	UniRef90_A0A415XFH4	Phage tail protein	NA
UHGV-0037464_16	eggNOG-mapper	1232446.BAIE02000011_gene1591	domain, Protein	NA
UHGV-0037464_16	COG	COG5492	NA	NA
UHGV-0037464_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0037464_17	PHROG	phrog_123	tail terminator	connector
UHGV-0037464_17	UniRef90	UniRef90_A0A139QID5	Phage-associated protein	NA
UHGV-0037464_17	eggNOG-mapper	1321820.HMPREF1983_00928	NA	NA
UHGV-0037464_17	Structural annotation	PF06141	NA	NA
UHGV-0037464_18	PHROG	phrog_387	neck protein	connector
UHGV-0037464_18	eggNOG-mapper	936375.HMPREF1152_0683	NA	NA
UHGV-0037464_19	PHROG	phrog_501	head closure Hc1	connector
UHGV-0037464_19	UniRef90	UniRef90_R5J5U6	ORF34	NA
UHGV-0037464_19	eggNOG-mapper	1121864.OMO_02155	NA	NA
UHGV-0037464_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0037464_20	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0037464_20	UniRef90	UniRef90_A0A1C6EGQ6	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0037464_20	eggNOG-mapper	1232446.BAIE02000011_gene1595	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0037464_20	Pfam	PF09355	NA	Phage_Gp19
UHGV-0037464_20	Structural annotation	PF09355	NA	NA
UHGV-0037464_22	PHROG	phrog_32396	NA	unknown function
UHGV-0037464_22	UniRef90	UniRef90_A0A415XFE1	Phage major capsid protein	NA
UHGV-0037464_22	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-0037464_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037464_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037464_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0037464_23	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0037464_23	UniRef90	UniRef90_A0A415XFD9	NA	NA
UHGV-0037464_23	eggNOG-mapper	1232446.BAIE02000011_gene1597	NA	NA
UHGV-0037464_23	Pfam	PF14265	NA	DUF4355
UHGV-0037464_23	Structural annotation	PF14265	NA	NA
UHGV-0037464_24	PHROG	phrog_17688	NA	unknown function
UHGV-0037464_24	UniRef90	UniRef90_A0A415XFD7	Terminase	NA
UHGV-0037464_24	eggNOG-mapper	938278.CAJO01000051_gene790	phage terminase, large subunit	NA
UHGV-0037464_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0037464_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0037464_25	Structural annotation	PF21485	NA	NA
UHGV-0037464_26	PHROG	phrog_1374	NA	unknown function
UHGV-0037464_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0037464_28	UniRef90	UniRef90_UPI001C2C9BDC	ADP-ribosyltransferase	NA
UHGV-0037464_28	eggNOG-mapper	1232446.BAIE02000011_gene1601	cell adhesion	NA
UHGV-0037464_28	COG	COG2369	NA	NA
UHGV-0037464_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0037464_29	UniRef90	UniRef90_A0A415XFD5	Phage portal protein	NA
UHGV-0037464_29	eggNOG-mapper	1232446.BAIE02000011_gene1602	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0037464_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0037464_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0037464_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0037464_30	UniRef90	UniRef90_A0A415XFF8	HNH endonuclease	NA
UHGV-0037464_30	eggNOG-mapper	1232446.BAIE02000011_gene1603	HNH endonuclease domain protein	NA
UHGV-0037464_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0037464_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0037464_31	Structural annotation	TIGR01636	NA	NA
UHGV-0037464_35	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0037464_35	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0037464_35	eggNOG-mapper	1196324.A374_08899	protein conserved in bacteria	NA
UHGV-0037464_35	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0037464_35	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0037464_35	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0037464_36	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0037464_36	UniRef90	UniRef90_A0A415XFC7	HNH endonuclease	NA
UHGV-0037464_36	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0037464_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0037464_36	Structural annotation	PF13392	NA	NA
UHGV-0037464_37	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0037464_37	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-0037464_37	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0037464_37	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0037464_38	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0037464_38	PHROG	phrog_216	integrase	integration and excision
UHGV-0037464_38	UniRef90	UniRef90_A0A415XFD4	Tyr recombinase domain-containing protein	NA
UHGV-0037464_38	eggNOG-mapper	1232446.BAIE02000011_gene1620	Integrase	NA
UHGV-0037464_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037464_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037464_38	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0037464_40	PHROG	phrog_15768	NA	unknown function
UHGV-0037464_40	UniRef90	UniRef90_A0A417IQT8	NA	NA
UHGV-0037464_40	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-0037464_40	Pfam	PF19808	NA	DUF6291
UHGV-0037464_41	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0037464_42	PHROG	phrog_1029	NA	unknown function
UHGV-0037464_42	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0037464_42	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0037464_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0037464_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0037464_50	UniRef90	UniRef90_A0A417IQR1	XRE family transcriptional regulator	NA
UHGV-0037464_50	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0037464_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0037464_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0037464_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0037464_50	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0037464_53	KOfam	K14059	int; integrase	NA
UHGV-0037464_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0037464_53	UniRef90	UniRef90_A0A417IQT3	Site-specific integrase	NA
UHGV-0037464_53	eggNOG-mapper	428126.CLOSPI_00819	Phage integrase family	NA
UHGV-0037464_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0037464_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037464_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037464_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA