UHGV-0037585

Genome information

Genome length 34,978 bps

CDS count 34

Completeness 67.16% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037585
vOTU ID	vOTU-023533
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_23_THA0068JZ__NODE_979_length_34978_cov_9.091172
BioSample	SAMEA4969184
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.93
Jumbo phage	No

Genome content
Genome length	34,978 bps
GC content	32.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	96.21%
Average CDS length	992.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037585_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0037585_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0037585_1	UniRef90	UniRef90_UPI000A076D3F	HNH endonuclease	NA
UHGV-0037585_1	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0037585_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0037585_1	Structural annotation	PF05766, TIGR02646, COG1403	NA	NA
UHGV-0037585_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0037585_2	UniRef90	UniRef90_UPI0018FEA95F	phage terminase small subunit P27 family	NA
UHGV-0037585_2	eggNOG-mapper	1500386.A0A060AKR4_9CAUD	Phage terminase, small subunit	NA
UHGV-0037585_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0037585_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0037585_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0037585_3	UniRef90	UniRef90_UPI0005CA413C	terminase large subunit	NA
UHGV-0037585_3	eggNOG-mapper	1033739.CAEU01000068_gene122	Phage Terminase	NA
UHGV-0037585_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0037585_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0037585_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0037585_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0037585_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0037585_4	UniRef90	UniRef90_UPI000BFE5C69	phage portal protein	NA
UHGV-0037585_4	eggNOG-mapper	198094.BA_5358	Phage portal protein	NA
UHGV-0037585_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0037585_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0037585_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0037585_4	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0037585_6	PHROG	phrog_6721	NA	unknown function
UHGV-0037585_6	eggNOG-mapper	748727.CLJU_c30720	NA	NA
UHGV-0037585_6	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0037585_7	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0037585_7	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0037585_7	UniRef90	UniRef90_A0A1G5I5H6	Bifunctional protein FolD	NA
UHGV-0037585_7	eggNOG-mapper	411463.EUBVEN_02789	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0037585_7	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0037585_7	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0037585_7	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0037585_7	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-0037585_7	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0037585_8	PHROG	phrog_17627	NA	unknown function
UHGV-0037585_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0037585_10	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0037585_10	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0037585_10	Structural annotation	PF14359	NA	NA
UHGV-0037585_11	KOfam	K06904	NA	NA
UHGV-0037585_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0037585_11	UniRef90	UniRef90_A0A349YIG2	HK97 family phage prohead protease	NA
UHGV-0037585_11	eggNOG-mapper	1033739.CAEU01000069_gene9	Phage capsid family	NA
UHGV-0037585_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0037585_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0037585_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037585_12	UniRef90	UniRef90_UPI0004BB7922	phage major capsid protein	NA
UHGV-0037585_12	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0037585_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037585_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037585_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037585_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0037585_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037585_13	UniRef90	UniRef90_A0A4U7BJP6	Phage major capsid protein	NA
UHGV-0037585_13	eggNOG-mapper	306263.Cla_0852	Phage capsid family	NA
UHGV-0037585_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037585_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037585_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037585_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037585_14	UniRef90	UniRef90_A0A7H9CJB0	Phage major capsid protein, HK97 family	NA
UHGV-0037585_14	eggNOG-mapper	1121423.JONT01000007_gene544	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0037585_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037585_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037585_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037585_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037585_15	UniRef90	UniRef90_A0A3E5A417	Phage major capsid protein	NA
UHGV-0037585_15	eggNOG-mapper	683083.C414_000260154	Phage capsid family	NA
UHGV-0037585_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037585_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037585_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037585_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037585_16	eggNOG-mapper	1120945.ATUW01000001_gene1409	Phage major capsid protein, HK97 family	NA
UHGV-0037585_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037585_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037585_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037585_17	Pfam	PF11187	Mbeg1-like	Mbeg1-like
UHGV-0037585_17	COG	COG5153	Putative lipase ATG15 (essential for vacuolar disintegration of autophagic bodies)	NA
UHGV-0037585_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0037585_18	UniRef90	UniRef90_UPI000E166770	head-tail connector protein	NA
UHGV-0037585_18	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0037585_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0037585_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0037585_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0037585_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0037585_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0037585_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0037585_21	PHROG	phrog_88	major tail protein	tail
UHGV-0037585_21	eggNOG-mapper	1118057.CAGX01000043_gene484	Phage major tail protein, phi13 family	NA
UHGV-0037585_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0037585_21	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0037585_22	PHROG	phrog_88	major tail protein	tail
UHGV-0037585_22	eggNOG-mapper	1414720.CBYM010000049_gene117	phage major tail protein, phi13 family	NA
UHGV-0037585_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0037585_25	KOfam	K23368	TRIP11; thyroid receptor-interacting protein 11	NA
UHGV-0037585_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0037585_25	UniRef90	UniRef90_A0A845R723	Phage tail tape measure protein	NA
UHGV-0037585_25	eggNOG-mapper	1408424.JHYI01000032_gene3813	phage tail tape measure protein	NA
UHGV-0037585_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0037585_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0037585_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0037585_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0037585_26	UniRef90	UniRef90_UPI0018ABDFEB	phage tail family protein	NA
UHGV-0037585_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0037585_27	PHROG	phrog_19445	tail tip protein Tal	head and packaging
UHGV-0037585_27	UniRef90	UniRef90_UPI001585EDA8	phage tail protein	NA
UHGV-0037585_27	eggNOG-mapper	698769.JFBD01000002_gene2727	cellulase activity	NA
UHGV-0037585_27	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0037585_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0037585_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0037585_27	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0037585_28	PHROG	phrog_372	tail protein	tail
UHGV-0037585_28	UniRef90	UniRef90_A0A2U8UIA2	Minor tail protein	NA
UHGV-0037585_28	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0037585_28	Pfam	PF05895	NA	DUF859
UHGV-0037585_28	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0037585_28	COG	COG4675	Phage tail collar domain	NA
UHGV-0037585_28	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG4885	NA	NA
UHGV-0037585_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0037585_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0037585_30	UniRef90	UniRef90_UPI0018A97E52	site-specific integrase	NA
UHGV-0037585_30	eggNOG-mapper	397291.C804_01082	Phage integrase family	NA
UHGV-0037585_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0037585_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037585_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037585_30	Structural annotation	PF00589, PF02899, MF_01807, NF040815, COG4974	NA	NA
UHGV-0037585_32	PHROG	phrog_16573	NA	unknown function
UHGV-0037585_32	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0037585_32	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0037585_32	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0037585_33	eggNOG-mapper	536233.CLO_1580	NA	NA