UHGV-0037762

Genome information

Genome length 36,869 bps

CDS count 58

Completeness 57.54% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037762
vOTU ID	vOTU-035974
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2096
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.84
Jumbo phage	No

Genome content
Genome length	36,869 bps
GC content	43.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.18%
Average CDS length	580.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037762_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0037762_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0037762_1	UniRef90	UniRef90_A0A417CPX1	Recombinase family protein	NA
UHGV-0037762_1	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0037762_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0037762_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0037762_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0037762_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0037762_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0037762_2	UniRef90	UniRef90_UPI001D0F2C35	Ig-like domain-containing protein	NA
UHGV-0037762_2	eggNOG-mapper	180332.JTGN01000004_gene2488	domain, Protein	NA
UHGV-0037762_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0037762_2	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-0037762_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0037762_3	UniRef90	UniRef90_A0A417CPY7	XRE family transcriptional regulator	NA
UHGV-0037762_3	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0037762_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0037762_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0037762_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0037762_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0037762_5	UniRef90	UniRef90_A0A417CPK6	XRE family transcriptional regulator	NA
UHGV-0037762_5	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0037762_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0037762_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0037762_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0037762_7	Structural annotation	NF040556	NA	NA
UHGV-0037762_11	PHROG	phrog_2717	NA	unknown function
UHGV-0037762_11	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-0037762_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0037762_15	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0037762_15	Structural annotation	PF01446	NA	NA
UHGV-0037762_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0037762_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0037762_16	UniRef90	UniRef90_A0A417CPS0	RNase H type-1 domain-containing protein	NA
UHGV-0037762_16	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0037762_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0037762_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0037762_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0037762_17	PHROG	phrog_15077	NA	unknown function
UHGV-0037762_17	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0037762_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0037762_18	PHROG	phrog_7566	NA	unknown function
UHGV-0037762_18	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0037762_21	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0037762_25	PHROG	phrog_19011	NA	unknown function
UHGV-0037762_25	Structural annotation	PF17516, COG4466	NA	NA
UHGV-0037762_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0037762_26	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0037762_26	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0037762_26	Structural annotation	PF02996	NA	NA
UHGV-0037762_27	PHROG	phrog_9125	NA	unknown function
UHGV-0037762_27	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0037762_28	PHROG	phrog_2990	NA	unknown function
UHGV-0037762_28	UniRef90	UniRef90_A0A417CPS7	NA	NA
UHGV-0037762_28	eggNOG-mapper	411462.DORLON_00798	NA	NA
UHGV-0037762_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0037762_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0037762_30	UniRef90	UniRef90_A0A417CPY2	Terminase small subunit	NA
UHGV-0037762_30	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0037762_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0037762_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0037762_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0037762_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0037762_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0037762_31	UniRef90	UniRef90_A0A417CQ07	Terminase	NA
UHGV-0037762_31	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0037762_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0037762_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0037762_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0037762_32	UniRef90	UniRef90_A0A1C5YZW6	Phage portal protein, putative, A118 family	NA
UHGV-0037762_32	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0037762_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0037762_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0037762_33	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0037762_33	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0037762_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0037762_33	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0037762_33	Structural annotation	PF06152	NA	NA
UHGV-0037762_34	Structural annotation	PF11344	NA	NA
UHGV-0037762_35	PHROG	phrog_1048	NA	unknown function
UHGV-0037762_35	UniRef90	UniRef90_A0A417CPJ8	NA	NA
UHGV-0037762_35	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0037762_35	Pfam	PF11195	NA	DUF2829
UHGV-0037762_35	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0037762_35	Structural annotation	PF11195	NA	NA
UHGV-0037762_36	PHROG	phrog_918	NA	unknown function
UHGV-0037762_36	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0037762_36	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0037762_36	Pfam	PF19791	NA	DUF6275
UHGV-0037762_36	Structural annotation	PF19791	NA	NA
UHGV-0037762_37	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0037762_37	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0037762_37	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0037762_40	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0037762_40	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0037762_41	PHROG	phrog_422	major head protein	head and packaging
UHGV-0037762_41	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0037762_41	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0037762_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0037762_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0037762_42	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0037762_43	PHROG	phrog_8710	NA	unknown function
UHGV-0037762_43	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0037762_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0037762_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0037762_44	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0037762_45	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0037762_45	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0037762_45	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0037762_45	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0037762_45	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0037762_46	PHROG	phrog_820	major tail protein	tail
UHGV-0037762_46	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0037762_46	Structural annotation	PF06199, TIGR02241, COG5437	NA	NA
UHGV-0037762_47	PHROG	phrog_8300	NA	unknown function
UHGV-0037762_47	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0037762_47	Structural annotation	PF06854	NA	NA
UHGV-0037762_48	PHROG	phrog_8355	NA	unknown function
UHGV-0037762_48	UniRef90	UniRef90_UPI001C031F13	Gp15 family bacteriophage protein	NA
UHGV-0037762_48	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0037762_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0037762_50	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0037762_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0037762_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0037762_51	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0037762_51	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0037762_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0037762_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0037762_52	PHROG	phrog_1194	NA	unknown function
UHGV-0037762_52	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0037762_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0037762_53	PHROG	phrog_2566	NA	unknown function
UHGV-0037762_53	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0037762_53	eggNOG-mapper	203120.LEUM_1633	NA	NA
UHGV-0037762_54	PHROG	phrog_1401	NA	unknown function
UHGV-0037762_54	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0037762_54	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0037762_54	Pfam	PF07761	NA	DUF1617
UHGV-0037762_54	Structural annotation	PF07761	NA	NA
UHGV-0037762_56	PHROG	phrog_16267	NA	unknown function
UHGV-0037762_56	UniRef90	UniRef90_UPI00073E79CE	phage tail protein	NA
UHGV-0037762_56	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0037762_56	COG	COG4926	Phage-related protein	NA
UHGV-0037762_56	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0037762_57	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0037762_57	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0037762_58	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0037762_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0037762_58	UniRef90	UniRef90_A0A1C5YVZ3	Tyrosine recombinase XerD	NA
UHGV-0037762_58	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0037762_58	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0037762_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037762_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0037762_58	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA