UHGV-0037960

Genome information

Genome length 39,657 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9449

Prediction confidence Confident

Genome information
Genome ID	UHGV-0037960
vOTU ID	vOTU-060133
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_616
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9449
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.32
Jumbo phage	No

Genome content
Genome length	39,657 bps
GC content	33.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.00%
Average CDS length	551.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0037960_1	KOfam	K14059	int; integrase	NA
UHGV-0037960_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0037960_1	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-0037960_1	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-0037960_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0037960_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0037960_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037960_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0037960_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0037960_2	PHROG	phrog_29609	NA	unknown function
UHGV-0037960_2	UniRef90	UniRef90_UPI00189EBA64	transposase	NA
UHGV-0037960_2	eggNOG-mapper	706434.HMPREF9429_00181	NA	NA
UHGV-0037960_2	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0037960_2	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0037960_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0037960_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0037960_3	UniRef90	UniRef90_UPI000E4DDC44	XRE family transcriptional regulator	NA
UHGV-0037960_3	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-0037960_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0037960_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0037960_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0037960_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0037960_4	UniRef90	UniRef90_UPI001314138F	helix-turn-helix domain-containing protein	NA
UHGV-0037960_4	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0037960_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0037960_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0037960_5	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0037960_5	UniRef90	UniRef90_UPI000E48D72B	ORF6C domain-containing protein	NA
UHGV-0037960_5	eggNOG-mapper	1232446.BAIE02000002_gene798	ORF6C domain	NA
UHGV-0037960_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0037960_5	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0037960_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0037960_5	Structural annotation	PF02498, PF10552, TIGR02681, COG3617	NA	NA
UHGV-0037960_10	PHROG	phrog_6996	NA	unknown function
UHGV-0037960_13	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0037960_13	UniRef90	UniRef90_UPI000E4F8DA0	NA	NA
UHGV-0037960_13	eggNOG-mapper	420246.GTNG_2077	NA	NA
UHGV-0037960_13	Structural annotation	COG2250	NA	NA
UHGV-0037960_14	PHROG	phrog_7445	NA	unknown function
UHGV-0037960_14	UniRef90	UniRef90_UPI001C2C3882	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0037960_14	eggNOG-mapper	1122989.KB898582_gene1853	PcfK-like protein	NA
UHGV-0037960_14	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0037960_15	PHROG	phrog_8470	NA	unknown function
UHGV-0037960_15	UniRef90	UniRef90_UPI000E4E20B7	PcfJ domain-containing protein	NA
UHGV-0037960_15	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-0037960_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0037960_15	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0037960_17	KOfam	K03744	lemA; LemA protein	NA
UHGV-0037960_17	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0037960_17	UniRef90	UniRef90_UPI000E519A27	LemA family protein	NA
UHGV-0037960_17	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0037960_17	Pfam	PF04011	LemA family	LemA
UHGV-0037960_17	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0037960_17	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0037960_18	PHROG	phrog_3886	NA	unknown function
UHGV-0037960_18	eggNOG-mapper	742733.HMPREF9469_05056	NA	NA
UHGV-0037960_20	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-0037960_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0037960_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0037960_21	UniRef90	UniRef90_UPI000E54C62B	tyrosine-type recombinase/integrase	NA
UHGV-0037960_21	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0037960_21	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0037960_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0037960_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0037960_21	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0037960_24	PHROG	phrog_7711	NA	unknown function
UHGV-0037960_24	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0037960_24	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0037960_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0037960_27	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0037960_27	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0037960_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0037960_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0037960_27	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0037960_28	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0037960_28	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0037960_28	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0037960_28	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0037960_29	PHROG	phrog_6969	NA	unknown function
UHGV-0037960_29	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-0037960_29	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0037960_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0037960_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0037960_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0037960_30	UniRef90	UniRef90_UPI001C390552	ATP-binding protein	NA
UHGV-0037960_30	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0037960_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0037960_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0037960_30	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0037960_33	UniRef90	UniRef90_G9R105	HIPIP domain-containing protein	NA
UHGV-0037960_33	Pfam	PF01355	High potential iron-sulfur protein	HIPIP
UHGV-0037960_34	PHROG	phrog_1828	NA	unknown function
UHGV-0037960_36	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0037960_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0037960_37	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-0037960_37	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0037960_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0037960_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0037960_39	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0037960_39	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-0037960_39	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-0037960_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0037960_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0037960_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0037960_40	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-0037960_40	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0037960_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0037960_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0037960_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0037960_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0037960_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0037960_41	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-0037960_41	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0037960_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0037960_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0037960_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0037960_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0037960_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0037960_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0037960_42	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0037960_42	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0037960_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0037960_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0037960_42	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0037960_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0037960_43	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-0037960_43	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0037960_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0037960_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0037960_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0037960_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0037960_44	PHROG	phrog_749	NA	unknown function
UHGV-0037960_44	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0037960_45	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0037960_45	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-0037960_46	PHROG	phrog_78	tail terminator	connector
UHGV-0037960_46	UniRef90	UniRef90_A0A0Z8IUE1	Prophage pi2 protein 38	NA
UHGV-0037960_46	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-0037960_46	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0037960_47	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0037960_47	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0037960_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0037960_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0037960_48	PHROG	phrog_88	major tail protein	tail
UHGV-0037960_48	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-0037960_48	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-0037960_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0037960_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0037960_49	PHROG	phrog_709	NA	unknown function
UHGV-0037960_49	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-0037960_49	Structural annotation	PF11836	NA	NA
UHGV-0037960_50	PHROG	phrog_3033	NA	unknown function
UHGV-0037960_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0037960_51	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-0037960_51	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0037960_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0037960_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0037960_51	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0037960_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0037960_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0037960_52	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-0037960_52	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-0037960_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0037960_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0037960_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0037960_53	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0037960_53	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-0037960_53	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0037960_53	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0037960_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0037960_53	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0037960_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0037960_53	COG	COG4926	Phage-related protein	NA
UHGV-0037960_53	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0037960_54	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0037960_56	PHROG	phrog_38707	NA	unknown function
UHGV-0037960_56	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0037960_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0037960_57	PHROG	phrog_24267	NA	unknown function
UHGV-0037960_57	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-0037960_57	eggNOG-mapper	411468.CLOSCI_00188	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0037960_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0037960_58	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0037960_59	Structural annotation	NF040910	NA	NA
UHGV-0037960_60	PHROG	phrog_199	holin	lysis
UHGV-0037960_60	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-0037960_60	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-0037960_60	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0037960_60	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0037960_60	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0037960_60	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0037960_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0037960_61	PHROG	phrog_1794	amidase	lysis
UHGV-0037960_61	UniRef90	UniRef90_A0A3E3E9Q5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0037960_61	eggNOG-mapper	1286171.EAL2_c06030	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0037960_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0037960_61	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0037960_61	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0037960_63	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA
UHGV-0037960_65	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0037960_66	UniRef90	UniRef90_A0A7C6HVS1	BtrH N-terminal domain-containing protein	NA
UHGV-0037960_66	eggNOG-mapper	445974.CLORAM_00334	NA	NA