UHGV-0038062

Genome information

Genome length 33,114 bps

CDS count 57

Completeness 82.52% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0038062
vOTU ID	vOTU-035734
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_22_1305__NODE_2428_length_33114_cov_5.425614
BioSample	SAMEA4765756
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.35
Jumbo phage	No

Genome content
Genome length	33,114 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.71%
Average CDS length	530.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0038062_1	UniRef90	UniRef90_UPI00130E6CB1	chemotaxis protein	NA
UHGV-0038062_1	eggNOG-mapper	610130.Closa_1388	NA	NA
UHGV-0038062_1	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0038062_2	UniRef90	UniRef90_UPI0015D6FA9D	NA	NA
UHGV-0038062_2	eggNOG-mapper	478749.BRYFOR_06187	NA	NA
UHGV-0038062_2	Pfam	PF10387	NA	DUF2442
UHGV-0038062_2	Structural annotation	PF10387	NA	NA
UHGV-0038062_3	PHROG	phrog_14333	NA	unknown function
UHGV-0038062_3	UniRef90	UniRef90_A0A6L9H301	NA	NA
UHGV-0038062_3	eggNOG-mapper	626939.HMPREF9443_01279	NA	NA
UHGV-0038062_3	Pfam	PF13711	NA	DUF4160
UHGV-0038062_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0038062_4	PHROG	phrog_291	endolysin	lysis
UHGV-0038062_4	UniRef90	UniRef90_A0A1C6DUD7	Lysozyme M1	NA
UHGV-0038062_4	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0038062_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0038062_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0038062_4	Structural annotation	PF01183, MF_00152, NF008522, COG3757	NA	NA
UHGV-0038062_5	PHROG	phrog_443	holin	lysis
UHGV-0038062_5	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0038062_5	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0038062_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0038062_5	Structural annotation	PF16945	NA	NA
UHGV-0038062_6	UniRef90	UniRef90_A0A3A8UAU8	Hemolysin XhlA	NA
UHGV-0038062_6	eggNOG-mapper	1230342.CTM_14513	Haemolysin XhlA	NA
UHGV-0038062_7	PHROG	phrog_1220	head protein	head and packaging
UHGV-0038062_7	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0038062_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0038062_8	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0038062_8	eggNOG-mapper	1497679.EP56_02980	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0038062_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0038062_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0038062_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0038062_9	UniRef90	UniRef90_A0A416INB6	Phage tail family protein	NA
UHGV-0038062_9	eggNOG-mapper	1460635.JCM19038_3477	Phage tail protein	NA
UHGV-0038062_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0038062_9	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0038062_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0038062_10	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0038062_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0038062_10	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0038062_11	PHROG	phrog_706	NA	unknown function
UHGV-0038062_11	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0038062_11	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0038062_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0038062_11	Structural annotation	PF06854	NA	NA
UHGV-0038062_12	Structural annotation	PF20378	NA	NA
UHGV-0038062_13	PHROG	phrog_3099	NA	unknown function
UHGV-0038062_13	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0038062_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0038062_14	PHROG	phrog_3266	tail completion	connector
UHGV-0038062_14	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-0038062_14	Structural annotation	PF12691	NA	NA
UHGV-0038062_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0038062_15	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0038062_15	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0038062_15	Structural annotation	PF11114	NA	NA
UHGV-0038062_16	PHROG	phrog_3366	NA	unknown function
UHGV-0038062_16	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0038062_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0038062_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0038062_19	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0038062_19	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0038062_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0038062_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0038062_20	UniRef90	UniRef90_A0A174GWW4	Phage minor structural protein GP20	NA
UHGV-0038062_20	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0038062_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0038062_20	Structural annotation	PF06810	NA	NA
UHGV-0038062_21	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0038062_22	Structural annotation	PF11344	NA	NA
UHGV-0038062_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0038062_24	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0038062_24	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0038062_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0038062_24	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0038062_24	COG	COG2369	NA	NA
UHGV-0038062_24	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0038062_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0038062_25	UniRef90	UniRef90_UPI00164B7587	phage portal protein	NA
UHGV-0038062_25	eggNOG-mapper	479437.Elen_2623	phage minor capsid protein	NA
UHGV-0038062_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0038062_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0038062_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0038062_26	UniRef90	UniRef90_A0A6L5YLT0	Terminase_3 domain-containing protein	NA
UHGV-0038062_26	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0038062_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0038062_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0038062_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0038062_27	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0038062_27	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0038062_27	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0038062_27	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0038062_27	COG	COG5484	NA	NA
UHGV-0038062_27	Structural annotation	PF06056, NF040601	NA	NA
UHGV-0038062_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0038062_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0038062_29	UniRef90	UniRef90_A0A6N7W7P5	Tyrosine-type recombinase/integrase	NA
UHGV-0038062_29	eggNOG-mapper	1514668.JOOA01000001_gene378	Belongs to the 'phage' integrase family	NA
UHGV-0038062_29	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0038062_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0038062_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0038062_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0038062_30	Structural annotation	PF06004, NF033216	NA	NA
UHGV-0038062_34	Structural annotation	PF18358	NA	NA
UHGV-0038062_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0038062_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0038062_36	UniRef90	UniRef90_A0A316M8X6	PAPS_reduct domain-containing protein	NA
UHGV-0038062_36	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0038062_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0038062_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0038062_36	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0038062_38	PHROG	phrog_874	NA	unknown function
UHGV-0038062_38	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0038062_38	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0038062_38	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0038062_39	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0038062_39	UniRef90	UniRef90_A0A352SFW0	HNH endonuclease	NA
UHGV-0038062_39	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0038062_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0038062_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0038062_39	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0038062_40	PHROG	phrog_20593	NA	unknown function
UHGV-0038062_41	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0038062_41	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0038062_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0038062_42	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0038062_43	PHROG	phrog_8684	NA	unknown function
UHGV-0038062_43	UniRef90	UniRef90_A0A395X9H4	YopX domain-containing protein	NA
UHGV-0038062_43	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0038062_43	Pfam	PF09643	YopX protein	YopX
UHGV-0038062_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0038062_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0038062_44	PHROG	phrog_15198	NA	unknown function
UHGV-0038062_44	UniRef90	UniRef90_C7GC26	NA	NA
UHGV-0038062_44	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0038062_44	Pfam	PF04448	NA	DUF551
UHGV-0038062_45	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0038062_45	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0038062_47	eggNOG-mapper	397288.C806_00101	NA	NA
UHGV-0038062_50	PHROG	phrog_15768	NA	unknown function
UHGV-0038062_50	UniRef90	UniRef90_A0A0J9CGG0	NA	NA
UHGV-0038062_50	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0038062_50	AcrCatalog	cluster_14472	NA	NA
UHGV-0038062_50	Pfam	PF19808	NA	DUF6291
UHGV-0038062_50	Structural annotation	PF19808	NA	NA
UHGV-0038062_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0038062_51	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0038062_51	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0038062_51	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0038062_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0038062_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0038062_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0038062_53	PHROG	phrog_398	NA	unknown function
UHGV-0038062_53	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0038062_53	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0038062_53	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0038062_53	Structural annotation	PF16784	NA	NA
UHGV-0038062_54	PHROG	phrog_14970	NA	unknown function
UHGV-0038062_54	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0038062_54	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0038062_54	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0038062_54	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0038062_54	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0038062_55	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0038062_55	PHROG	phrog_5889	NA	unknown function
UHGV-0038062_55	UniRef90	UniRef90_A0A7X4ZAN0	HD family phosphohydrolase	NA
UHGV-0038062_55	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0038062_55	Pfam	PF01966	HD domain	HD
UHGV-0038062_55	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0038062_55	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0038062_57	Structural annotation	PF21596, TIGR03081	NA	NA