UHGV-0038094

Genome information

Genome length 38,356 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0038094
vOTU ID	vOTU-005397
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076JZ__NODE_1557_length_38433_cov_70.711909
BioSample	SAMEA4969198
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.37
Jumbo phage	No

Genome content
Genome length	38,356 bps
GC content	54.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.32%
Average CDS length	569.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0038094_1	COG	COG3103	NA	NA
UHGV-0038094_2	PHROG	phrog_37604	NA	unknown function
UHGV-0038094_2	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0038094_3	PHROG	phrog_881	holin	lysis
UHGV-0038094_3	UniRef90	UniRef90_UPI00156DCF78	phage holin	NA
UHGV-0038094_3	eggNOG-mapper	1231377.C426_1722	Putative phage holin Dp-1	NA
UHGV-0038094_3	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0038094_3	Structural annotation	PF16938	NA	NA
UHGV-0038094_6	PHROG	phrog_3754	NA	unknown function
UHGV-0038094_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0038094_7	PHROG	phrog_21718	NA	unknown function
UHGV-0038094_7	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0038094_8	PHROG	phrog_22984	NA	unknown function
UHGV-0038094_9	PHROG	phrog_16490	NA	unknown function
UHGV-0038094_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0038094_10	PHROG	phrog_20016	NA	unknown function
UHGV-0038094_10	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0038094_10	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0038094_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0038094_11	Structural annotation	PF12510	NA	NA
UHGV-0038094_12	KOfam	K14059	int; integrase	NA
UHGV-0038094_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0038094_12	UniRef90	UniRef90_G4KQB7	Putative integrase	NA
UHGV-0038094_12	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0038094_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0038094_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0038094_12	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0038094_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0038094_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0038094_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0038094_17	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0038094_17	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0038094_17	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0038094_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0038094_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0038094_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0038094_21	Structural annotation	PF05339, MF_00535, NF002773, COG1476	NA	NA
UHGV-0038094_26	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0038094_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0038094_27	PHROG	phrog_7566	NA	unknown function
UHGV-0038094_27	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0038094_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0038094_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0038094_28	UniRef90	UniRef90_A0A2N2A191	Single-stranded DNA-binding protein	NA
UHGV-0038094_28	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0038094_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0038094_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0038094_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0038094_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0038094_28	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0038094_29	PHROG	phrog_16304	NA	unknown function
UHGV-0038094_29	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0038094_29	Pfam	PF19808	NA	DUF6291
UHGV-0038094_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0038094_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0038094_31	UniRef90	UniRef90_M0LNU0	MazG domain-containing protein	NA
UHGV-0038094_31	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0038094_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0038094_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0038094_34	PHROG	phrog_924	NA	unknown function
UHGV-0038094_34	Pfam	PF04448	NA	DUF551
UHGV-0038094_38	PHROG	phrog_924	NA	unknown function
UHGV-0038094_38	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-0038094_38	Pfam	PF04448	NA	DUF551
UHGV-0038094_40	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0038094_40	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0038094_40	UniRef90	UniRef90_A0A3D5ZKM2	Bifunctional protein FolD	NA
UHGV-0038094_40	eggNOG-mapper	1206729.BAFZ01000068_gene4191	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0038094_40	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0038094_40	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0038094_40	Structural annotation	PF02882, MF_01576, NF010769, COG0190	NA	NA
UHGV-0038094_41	Structural annotation	PF08962	NA	NA
UHGV-0038094_42	PHROG	phrog_236	nucleotide kinase	other
UHGV-0038094_42	UniRef90	UniRef90_A0A417H6U1	NA	NA
UHGV-0038094_42	eggNOG-mapper	1268072.PSAB_05960	NA	NA
UHGV-0038094_42	Pfam	PF11753	NA	DUF3310
UHGV-0038094_44	Pfam	PF08681	NA	DUF1778
UHGV-0038094_44	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0038094_46	PHROG	phrog_3064	terminase	head and packaging
UHGV-0038094_46	UniRef90	UniRef90_A0A6M3K976	Putative terminase small subunit	NA
UHGV-0038094_46	eggNOG-mapper	1173749.S4TTT2_9CAUD	NA	NA
UHGV-0038094_46	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0038094_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0038094_47	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0038094_47	UniRef90	UniRef90_A0A413FUY4	Terminase_3 domain-containing protein	NA
UHGV-0038094_47	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0038094_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0038094_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0038094_47	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0038094_49	PHROG	phrog_156	portal protein	head and packaging
UHGV-0038094_49	eggNOG-mapper	1408437.JNJN01000001_gene1708	NA	NA
UHGV-0038094_49	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0038094_50	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0038094_51	PHROG	phrog_422	major head protein	head and packaging
UHGV-0038094_51	UniRef90	UniRef90_UPI001D089F97	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0038094_51	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0038094_51	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0038094_52	Structural annotation	PF11650	NA	NA
UHGV-0038094_53	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0038094_53	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0038094_53	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0038094_54	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0038094_56	PHROG	phrog_15594	NA	unknown function
UHGV-0038094_56	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0038094_58	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0038094_58	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0038094_61	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0038094_61	Structural annotation	PF21722	NA	NA
UHGV-0038094_63	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0038094_63	PHROG	phrog_18593	NA	unknown function
UHGV-0038094_63	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0038094_63	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0038094_63	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0038094_63	Structural annotation	PF14600	NA	NA