UHGV-0038230

Genome information

Genome length 38,960 bps

CDS count 48

Completeness 97.58% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0038230
vOTU ID	vOTU-070809
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_748
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.87
Jumbo phage	No

Genome content
Genome length	38,960 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.88%
Average CDS length	786.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0038230_1	KOfam	K14059	int; integrase	NA
UHGV-0038230_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0038230_1	UniRef90	UniRef90_A0A416Z2R8	Tyr recombinase domain-containing protein	NA
UHGV-0038230_1	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0038230_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0038230_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0038230_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0038230_2	UniRef90	UniRef90_A0A3R6Q4V1	YHYH domain-containing protein	NA
UHGV-0038230_2	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0038230_2	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0038230_2	COG	COG5492	NA	NA
UHGV-0038230_3	UniRef90	UniRef90_A0A3R6QMJ7	XRE family transcriptional regulator	NA
UHGV-0038230_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0038230_3	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0038230_3	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0038230_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0038230_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0038230_5	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0038230_5	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0038230_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0038230_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0038230_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0038230_8	PHROG	phrog_6058	NA	unknown function
UHGV-0038230_8	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0038230_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0038230_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0038230_12	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0038230_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0038230_13	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0038230_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0038230_13	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0038230_13	eggNOG-mapper	1163389.OOM_1312	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0038230_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0038230_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0038230_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0038230_14	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0038230_14	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0038230_14	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0038230_15	PHROG	phrog_24368	NA	unknown function
UHGV-0038230_15	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0038230_16	PHROG	phrog_20593	NA	unknown function
UHGV-0038230_16	UniRef90	UniRef90_A0A3R6QEJ7	NA	NA
UHGV-0038230_16	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0038230_17	PHROG	phrog_874	NA	unknown function
UHGV-0038230_17	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0038230_17	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0038230_17	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0038230_21	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0038230_22	PHROG	phrog_4433	NA	unknown function
UHGV-0038230_22	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0038230_22	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0038230_22	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0038230_23	PHROG	phrog_8470	NA	unknown function
UHGV-0038230_23	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0038230_23	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0038230_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0038230_23	Structural annotation	PF14284	NA	NA
UHGV-0038230_24	PHROG	phrog_15077	NA	unknown function
UHGV-0038230_24	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0038230_24	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0038230_24	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0038230_27	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0038230_28	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0038230_28	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0038230_28	UniRef90	UniRef90_A0A843HIF4	HDIG domain-containing protein	NA
UHGV-0038230_28	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0038230_28	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0038230_28	Structural annotation	PF21447, MF_01427, NF010007, COG3481	NA	NA
UHGV-0038230_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0038230_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0038230_32	UniRef90	UniRef90_A0A3A9GB54	Phage portal protein	NA
UHGV-0038230_32	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0038230_32	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0038230_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0038230_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0038230_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0038230_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0038230_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0038230_33	UniRef90	UniRef90_A0A2V2D4K5	Terminase-like family protein	NA
UHGV-0038230_33	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0038230_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0038230_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0038230_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0038230_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0038230_34	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-0038230_34	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0038230_35	KOfam	K07584	NA	NA
UHGV-0038230_35	PHROG	phrog_4478	peptidase	other
UHGV-0038230_35	UniRef90	UniRef90_A0A416Z2U9	Ribosomal-processing cysteine protease Prp	NA
UHGV-0038230_35	eggNOG-mapper	1121914.AUDW01000025_gene171	Cysteine protease Prp	NA
UHGV-0038230_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0038230_35	COG	COG2868	NA	NA
UHGV-0038230_36	PHROG	phrog_13908	NA	unknown function
UHGV-0038230_36	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-0038230_37	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0038230_37	UniRef90	UniRef90_A0A3R6PQZ4	N4-gp56 family major capsid protein	NA
UHGV-0038230_37	eggNOG-mapper	411483.FAEPRAA2165_01040	NA	NA
UHGV-0038230_37	Pfam	PF13252	NA	DUF4043
UHGV-0038230_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0038230_37	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0038230_38	PHROG	phrog_15239	NA	unknown function
UHGV-0038230_39	PHROG	phrog_12105	NA	unknown function
UHGV-0038230_39	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0038230_40	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0038230_40	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0038230_40	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0038230_42	PHROG	phrog_21397	NA	unknown function
UHGV-0038230_42	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0038230_43	PHROG	phrog_22978	NA	unknown function
UHGV-0038230_43	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0038230_43	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0038230_43	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0038230_44	PHROG	phrog_3639	minor tail protein	tail
UHGV-0038230_44	UniRef90	UniRef90_A0A3R6TVQ8	NA	NA
UHGV-0038230_44	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0038230_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0038230_44	Structural annotation	PF10651, NF032891, COG2372	NA	NA
UHGV-0038230_45	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0038230_45	UniRef90	UniRef90_UPI000E51CC95	tail fiber domain-containing protein	NA
UHGV-0038230_45	eggNOG-mapper	397288.C806_00116	NA	NA
UHGV-0038230_45	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0038230_46	PHROG	phrog_199	holin	lysis
UHGV-0038230_46	UniRef90	UniRef90_A0A3R6Q4W7	Holin	NA
UHGV-0038230_46	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0038230_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0038230_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0038230_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0038230_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0038230_47	PHROG	phrog_872	NA	unknown function
UHGV-0038230_47	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0038230_47	dbAPIS	APIS052	NA	NA
UHGV-0038230_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0038230_48	PHROG	phrog_435	endolysin	lysis
UHGV-0038230_48	UniRef90	UniRef90_A0A416Z2X7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0038230_48	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-0038230_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0038230_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0038230_48	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA