UHGV-0038518

Genome information

vOTU vOTU-020969

Genome length 50,669 bps

CDS count 73

Completeness 68.60% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0038518
vOTU ID	vOTU-020969
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_6_2233__NODE_1578_length_50746_cov_12.463183
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.85
Jumbo phage	No

Genome content
Genome length	50,669 bps
GC content	40.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	96.29%
Average CDS length	671.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0038518_14	eggNOG-mapper	1460634.JCM19037_4454	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0038518_14	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0038518_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0038518_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0038518_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0038518_16	UniRef90	UniRef90_UPI0007876F6F	PBSX family phage terminase large subunit	NA
UHGV-0038518_16	eggNOG-mapper	526218.Sterm_1426	Phage terminase, large subunit, PBSX family	NA
UHGV-0038518_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0038518_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0038518_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0038518_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0038518_16	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0038518_17	KOfam	K01507	ppa; inorganic pyrophosphatase [EC:3.6.1.1]	NA
UHGV-0038518_17	UniRef90	UniRef90_A0A0L0LLI4	Inorganic pyrophosphatase	NA
UHGV-0038518_17	eggNOG-mapper	1120980.JQKH01000014_gene789	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions	NA
UHGV-0038518_17	Pfam	PF00719	Inorganic pyrophosphatase	Pyrophosphatase
UHGV-0038518_17	COG	COG0221	Inorganic pyrophosphatase	NA
UHGV-0038518_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0038518_19	UniRef90	UniRef90_A0A2V5KDL5	Phage portal protein	NA
UHGV-0038518_19	eggNOG-mapper	1121344.JHZO01000003_gene976	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0038518_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0038518_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0038518_21	PHROG	phrog_34297	NA	unknown function
UHGV-0038518_24	PHROG	phrog_6465	tail protein	tail
UHGV-0038518_24	eggNOG-mapper	1410624.JNKK01000017_gene1989	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0038518_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0038518_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0038518_26	UniRef90	UniRef90_UPI00101DFEBC	minor capsid protein	NA
UHGV-0038518_26	eggNOG-mapper	743719.PaelaDRAFT_2397	Phage Mu protein F like protein	NA
UHGV-0038518_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0038518_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0038518_26	COG	COG2369	NA	NA
UHGV-0038518_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0038518_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0038518_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0038518_28	UniRef90	UniRef90_A0A2S6HQG1	Minor structural protein GP20	NA
UHGV-0038518_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0038518_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0038518_30	UniRef90	UniRef90_A0A0F5HMN1	Phage major capsid protein	NA
UHGV-0038518_30	eggNOG-mapper	1262449.CP6013_2085	Phage major capsid protein E	NA
UHGV-0038518_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0038518_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0038518_31	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0038518_31	eggNOG-mapper	642492.Clole_2755	NA	NA
UHGV-0038518_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0038518_36	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0038518_39	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0038518_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0038518_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0038518_43	UniRef90	UniRef90_A0A843GXK0	SF4 helicase domain-containing protein	NA
UHGV-0038518_43	eggNOG-mapper	665950.HMPREF1025_01421	DnaB-like helicase C terminal domain	NA
UHGV-0038518_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0038518_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0038518_43	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0038518_44	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0038518_44	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0038518_44	UniRef90	UniRef90_U2M6E9	Toprim domain protein	NA
UHGV-0038518_44	eggNOG-mapper	411473.RUMCAL_00391	Toprim-like	NA
UHGV-0038518_44	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0038518_44	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0038518_44	Structural annotation	PF01807, PF13155, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0038518_47	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0038518_47	eggNOG-mapper	871584.D9ZNH8_9CAUD	nuclease activity	NA
UHGV-0038518_51	PHROG	phrog_7070	NA	unknown function
UHGV-0038518_51	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0038518_52	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0038518_52	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0038518_52	UniRef90	UniRef90_A0A843GW54	RECA_3 domain-containing protein	NA
UHGV-0038518_52	eggNOG-mapper	59241.E7DN79_BPDP1	DNA-dependent ATPase activity	NA
UHGV-0038518_52	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0038518_52	Structural annotation	PF00154, PF21096, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0038518_53	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0038518_53	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0038518_53	UniRef90	UniRef90_UPI001D067942	HD domain-containing protein	NA
UHGV-0038518_53	eggNOG-mapper	552398.HMPREF0866_02492	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0038518_53	Pfam	PF01966	HD domain	HD
UHGV-0038518_53	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0038518_53	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0038518_55	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0038518_55	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0038518_55	UniRef90	UniRef90_A0A0A0HYR6	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0038518_55	eggNOG-mapper	176279.SERP1534	ATP dependent DNA ligase domain	NA
UHGV-0038518_55	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0038518_55	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0038518_55	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-0038518_55	Structural annotation	PF01068, PF17879, MF_00407, NF002868, COG1793	NA	NA
UHGV-0038518_61	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0038518_61	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0038518_61	UniRef90	UniRef90_A0A7X8ZBG5	DNA polymerase I	NA
UHGV-0038518_61	eggNOG-mapper	59241.E7DND5_BPDP1	DNA polymerase family A	NA
UHGV-0038518_61	PADLOC	drt-cluster58	DRT	DRT
UHGV-0038518_61	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0038518_61	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0038518_61	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0038518_63	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0038518_63	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0038518_63	UniRef90	UniRef90_A0A7X8ZBW6	DEAD/DEAH box helicase	NA
UHGV-0038518_63	eggNOG-mapper	1084719.G3MAX4_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-0038518_63	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0038518_63	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0038518_63	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0038518_65	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0038518_65	eggNOG-mapper	59241.E7DN71_BPDP1	tRNA modification	NA
UHGV-0038518_65	Structural annotation	PF00290, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0038518_67	UniRef90	UniRef90_A0A150AJF5	Uroporphyrinogen decarboxylase	NA
UHGV-0038518_67	eggNOG-mapper	1121878.AUGL01000001_gene253	Bacterial inner membrane protein	NA
UHGV-0038518_67	Structural annotation	PF10688	NA	NA
UHGV-0038518_68	KOfam	K02343	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	NA
UHGV-0038518_68	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0038518_68	UniRef90	UniRef90_A0A432J4B1	DNA polymerase III subunit gamma/tau	NA
UHGV-0038518_68	eggNOG-mapper	1537915.JU57_04170	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0038518_68	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0038518_68	COG	COG2812	DNA polymerase III, gamma/tau subunits	NA
UHGV-0038518_68	Structural annotation	PF13177, PF12169, PF17864, MF_01509, NF004046, COG2812	NA	NA
UHGV-0038518_70	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0038518_70	PHROG	phrog_4899	NA	unknown function
UHGV-0038518_70	UniRef90	UniRef90_A0A413HZ97	VUT family protein	NA
UHGV-0038518_70	eggNOG-mapper	518637.EUBIFOR_02308	Putative vitamin uptake transporter	NA
UHGV-0038518_70	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0038518_71	Structural annotation	PF13641, MF_00057, TIGR03965, COG1216	NA	NA
UHGV-0038518_72	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0038518_72	eggNOG-mapper	59241.E7DN89_BPDP1	NA	NA
UHGV-0038518_72	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA