UHGV-0038587

Genome information

vOTU vOTU-020567

Genome length 19,828 bps

CDS count 31

Completeness 56.25% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0038587
vOTU ID	vOTU-020567
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_3_RAJ1020YZ__NODE_3333_length_19828_cov_3.653638
BioSample	SAMEA4969166
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.77
Jumbo phage	No

Genome content
Genome length	19,828 bps
GC content	54.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.49%
Average CDS length	608.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0038587_1	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0038587_2	PHROG	phrog_18725	NA	unknown function
UHGV-0038587_2	eggNOG-mapper	1203606.HMPREF1526_00967	Concanavalin A-like lectin/glucanases superfamily	NA
UHGV-0038587_2	COG	COG3209	NA	NA
UHGV-0038587_3	PHROG	phrog_13879	NA	unknown function
UHGV-0038587_3	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0038587_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0038587_4	PHROG	phrog_1194	NA	unknown function
UHGV-0038587_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0038587_5	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0038587_5	UniRef90	UniRef90_A0A383RGU3	Putative phage protein	NA
UHGV-0038587_5	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0038587_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0038587_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0038587_7	PHROG	phrog_34587	NA	unknown function
UHGV-0038587_7	eggNOG-mapper	1536773.R70331_25685	NA	NA
UHGV-0038587_7	Structural annotation	PF11836	NA	NA
UHGV-0038587_8	PHROG	phrog_158	major tail protein	tail
UHGV-0038587_8	UniRef90	UniRef90_A0A1M4ZE17	Predicted secreted protein	NA
UHGV-0038587_8	eggNOG-mapper	1536773.R70331_25690	Phage tail tube protein	NA
UHGV-0038587_8	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0038587_8	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0038587_9	PHROG	phrog_347	tail terminator	connector
UHGV-0038587_9	UniRef90	UniRef90_UPI000379DA35	NA	NA
UHGV-0038587_9	eggNOG-mapper	1536773.R70331_25695	NA	NA
UHGV-0038587_9	Pfam	PF11367	NA	DUF3168
UHGV-0038587_9	Structural annotation	PF11367	NA	NA
UHGV-0038587_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0038587_10	UniRef90	UniRef90_A0A1C6JN94	Phage protein, HK97 gp10 family	NA
UHGV-0038587_10	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0038587_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0038587_10	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0038587_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-0038587_11	UniRef90	UniRef90_UPI000B993E88	phage head closure protein	NA
UHGV-0038587_11	eggNOG-mapper	529507.PMI0929	Phage head-tail joining protein	NA
UHGV-0038587_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0038587_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0038587_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0038587_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0038587_12	UniRef90	UniRef90_UPI001C01C9EA	head-tail connector protein	NA
UHGV-0038587_12	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-0038587_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0038587_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0038587_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0038587_13	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0038587_13	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0038587_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0038587_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0038587_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0038587_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0038587_14	KOfam	K06904	NA	NA
UHGV-0038587_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0038587_14	UniRef90	UniRef90_UPI0018A08760	HK97 family phage prohead protease	NA
UHGV-0038587_14	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0038587_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0038587_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0038587_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0038587_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0038587_15	UniRef90	UniRef90_UPI00082C9597	phage portal protein	NA
UHGV-0038587_15	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0038587_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0038587_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0038587_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0038587_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0038587_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0038587_16	UniRef90	UniRef90_UPI00082E9F54	terminase large subunit	NA
UHGV-0038587_16	eggNOG-mapper	742738.HMPREF9460_01363	Phage Terminase	NA
UHGV-0038587_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0038587_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0038587_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0038587_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0038587_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0038587_17	UniRef90	UniRef90_UPI0018A0AFF9	P27 family phage terminase small subunit	NA
UHGV-0038587_17	eggNOG-mapper	742738.HMPREF9460_01362	phage terminase small subunit	NA
UHGV-0038587_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0038587_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0038587_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0038587_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0038587_18	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0038587_18	UniRef90	UniRef90_A0A373VSA3	HNH endonuclease	NA
UHGV-0038587_18	eggNOG-mapper	272562.CA_C1897	HNH endonuclease	NA
UHGV-0038587_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0038587_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0038587_19	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0038587_19	Structural annotation	TIGR01636	NA	NA
UHGV-0038587_21	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0038587_21	UniRef90	UniRef90_A0A6L9H7K0	NA	NA
UHGV-0038587_21	eggNOG-mapper	1458856.A0A059T699_9CAUD	NA	NA
UHGV-0038587_21	Pfam	PF12961	NA	DUF3850
UHGV-0038587_21	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0038587_23	UniRef90	UniRef90_A0A810Q569	NA	NA
UHGV-0038587_23	Pfam	PF04448	NA	DUF551
UHGV-0038587_23	Structural annotation	NF041588	NA	NA
UHGV-0038587_24	Structural annotation	PF09038	NA	NA
UHGV-0038587_27	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0038587_28	PHROG	phrog_25732	NA	unknown function
UHGV-0038587_28	UniRef90	UniRef90_UPI00058CBB51	Lar family restriction alleviation protein	NA
UHGV-0038587_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0038587_29	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0038587_29	UniRef90	UniRef90_UPI00137A1EA0	DNA cytosine methyltransferase	NA
UHGV-0038587_29	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0038587_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0038587_29	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0038587_31	PHROG	phrog_824	NA	unknown function
UHGV-0038587_31	UniRef90	UniRef90_UPI000A266FAF	VRR-NUC domain-containing protein	NA
UHGV-0038587_31	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0038587_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0038587_31	Structural annotation	PF08774	NA	NA